Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50150 552 / 0 Protein of Unknown Function (DUF239) (.1) AT1G70550 507 / 1e-180 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G10750 503 / 5e-178 Protein of Unknown Function (DUF239) (.1) AT1G23340 498 / 4e-177 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT5G18460 382 / 3e-131 Protein of Unknown Function (DUF239) (.1) AT3G13510 378 / 2e-129 Protein of Unknown Function (DUF239) (.1) AT1G55360 374 / 7e-128 Protein of Unknown Function (DUF239) (.1) AT5G56530 365 / 2e-124 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT2G44210 338 / 4e-114 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT2G44220 306 / 2e-101 Protein of Unknown Function (DUF239) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039949 [exp] 743 / 0 AT5G50150 575 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10042092 [exp] 553 / 0 AT5G50150 540 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10001248 [exp] 551 / 0 AT5G50150 580 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10013046 [exp] 509 / 6e-180 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10029116 [exp] 506 / 6e-179 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10004766 [exp] 391 / 3e-134 AT5G18460 603 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10010315 [exp] 382 / 1e-131 AT3G13510 626 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10003100 [exp] 378 / 1e-128 AT5G18460 593 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10013410 [exp] 363 / 8e-124 AT3G13510 708 / 0.0 Protein of Unknown Function (DUF239) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G080300 [exp] 597 / 0 AT5G50150 637 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.012G088300 [exp] 584 / 0 AT5G50150 592 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.010G044300 [exp] 535 / 0 AT1G70550 664 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.008G188000 [exp] 530 / 0 AT1G70550 661 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.013G050100 [exp] 399 / 1e-137 AT5G18460 635 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.019G024100 [exp] 395 / 4e-136 AT5G18460 622 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G233000 [exp] 378 / 2e-129 AT3G13510 621 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.003G221200 [exp] 376 / 8e-129 AT1G55360 716 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G003800 [exp] 367 / 5e-125 AT1G55360 689 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.006G233600 [exp] 200 / 4e-60 AT5G25950 310 / 3e-102 Protein of Unknown Function (DUF239) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03080 [flax] [poplar] Neprosin Neprosin
Representative CDS sequence Show only first row Show all	>Lus10027683 pacid=23151211 polypeptide=Lus10027683 locus=Lus10027683.g ID=Lus10027683.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCTGCTACTATATCCCACATTTTTGTTGCTTTCCTGCTTGTCTTTCTCTGTTCCTTCCCCATTCCAGTCTTGTCTGCTTCAAAGAACCAGA CTGTCAATCCAACAAAAGAGCTTCTCAAGCTCAAGAAAGTCAATGCTTATCTCAGCAAGATCAACAAGCCTCCAGTCAAGACAATTCAGAGCCCAGATGG GGATGTGATTGACTGTGTATTATCCCATCTCCAACCTGCATTTGATCATCCCGAGCTTAGAGGACAGAAACCCTTGGATGCACCAGAGAGGCGCCCAAAA GGTAATGAGACATCAGAGGCAATTGGGGAGAGCTCGCAACTATGGGCTGATTCAGGGGAATCCTGCCCACAAGGAACTGTTCCCATCAGAAGAACTACTG AGAAAGATGTTCTTAGAGCAAATAAGCTCATGAGATTTGGGAGGAAGAAACCCATTAGACATCTCAGGAGGGATTCAGCTGGAAATGGACATGAGCATGC AGTGGTGTTTGTGAACGGAGAACAATATTATGGAGCAAAGGCAAATATAAACGTGAGCCCTGAGTTGTATGGAGACAACTATCCCAGATTCTTCACTTAT TGGACTACGGATGCATATCAAGCTACTGGATGCTACAACTTGCTTTGTTCTGGGTTTGTTCAAACAAACAATAGGATCGCCATTGGAGCTGCAATTTCAC CTAGGTCATCATATCATGGAAGACAGTTTGATATTGGCCTAATGGTTTGGAAGGATCCGAAGCATGGGCACTGGTGGCTGGAGTTTGGGTCAGGGCTGCT GGTGGGTTACTGGCCAGCATTTTTGTTCAGTCACTTGAGGAGCCATGCGAGCATGATACAATTTGGAGGGGAGATAGTGAACTCAAGATCAACAGGAGTA CACACTTACACCCAAATGGGAAGTGGTCATTTTGCTGATGAAGGGTTTGGGAAAGCATCCTATTTCAGGAACCTGCAGACAGTGGATTGGGACAATAATC TGCTGCCTCCCACAAACCTCCATCTATTAGCAGACCATCCTAATTGCTATGATATAAGGCAAGGCAGGAACAATGTTTGGGGGACTTACTTTTACTATGG AGGTCCTGGAAGGAATGTAAGATGTCCATAA
AA sequence Show only first row Show all	>Lus10027683 pacid=23151211 polypeptide=Lus10027683 locus=Lus10027683.g ID=Lus10027683.BGIv1.0 annot-version=v1.0 MAASATISHIFVAFLLVFLCSFPIPVLSASKNQTVNPTKELLKLKKVNAYLSKINKPPVKTIQSPDGDVIDCVLSHLQPAFDHPELRGQKPLDAPERRPK GNETSEAIGESSQLWADSGESCPQGTVPIRRTTEKDVLRANKLMRFGRKKPIRHLRRDSAGNGHEHAVVFVNGEQYYGAKANINVSPELYGDNYPRFFTY WTTDAYQATGCYNLLCSGFVQTNNRIAIGAAISPRSSYHGRQFDIGLMVWKDPKHGHWWLEFGSGLLVGYWPAFLFSHLRSHASMIQFGGEIVNSRSTGV HTYTQMGSGHFADEGFGKASYFRNLQTVDWDNNLLPPTNLHLLADHPNCYDIRQGRNNVWGTYFYYGGPGRNVRCP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50150			Protein of Unknown Function (D...		Lus10027683 [exp]	0	1
AT5G50150			Protein of Unknown Function (D...		Lus10039949 [exp]	1.0	0.9242
AT5G14210			Leucine-rich repeat protein ki...		Lus10035225 [exp]	1.4	0.8994
AT5G58160			actin binding (.1)		Lus10007447 [exp]	2.4	0.8620
AT4G24630			DHHC-type zinc finger family p...		Lus10033527 [exp]	3.7	0.8211
AT3G48210			unknown protein		Lus10018093 [exp]	7.1	0.8250
AT1G63650	bHLH	EGL1, ATMYC-2, ...	ENHANCER OF GLABRA 3, basic he...		Lus10024631 [exp]	7.7	0.8593
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10025110 [exp]	8.0	0.7922
AT5G14210			Leucine-rich repeat protein ki...		Lus10032059 [exp]	8.8	0.8250
AT1G80170			Pectin lyase-like superfamily ...		Lus10036084 [exp]	8.8	0.7577
AT1G12390			Cornichon family protein (.1)		Lus10030270 [exp]	9.5	0.7842

Compare expression of checked genes

Lus10027683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.