Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25490 120 / 8e-34 AP2_ERF DREB1B, CBF1, ATCBF1 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) AT4G25480 120 / 1e-33 AP2_ERF CBF3, DREB1A, ATCBF3 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) AT4G25470 116 / 3e-32 AP2_ERF DREB1C, FTQ4, CBF2, ATCBF2 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) AT5G51990 111 / 5e-30 AP2_ERF CBF4, DREB1D DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) AT5G11590 100 / 2e-25 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT5G25810 99 / 2e-25 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT2G36450 94 / 5e-24 AP2_ERF HRD HARDY, Integrase-type DNA-binding superfamily protein (.1) AT2G44940 94 / 5e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G16280 93 / 5e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G16750 92 / 5e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035566 [exp] 296 / 1e-102 AT4G25470 143 / 7e-43 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) Lus10031654 [exp] 118 / 4e-33 AT4G25490 201 / 9e-66 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10027412 [exp] 116 / 5e-32 AT5G51990 239 / 3e-80 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Lus10027414 [exp] 114 / 2e-31 AT4G25490 208 / 1e-68 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10031657 [exp] 112 / 4e-30 AT5G51990 235 / 2e-78 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Lus10017829 [exp] 107 / 5e-29 AT1G63030 181 / 1e-58 DWARF AND DELAYED FLOWERING 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10001871 [exp] 107 / 1e-28 AT1G12610 193 / 4e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10006332 [exp] 107 / 1e-28 AT1G12610 194 / 1e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10006334 [exp] 107 / 2e-28 AT1G12610 193 / 3e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G110700 [exp] 127 / 4e-36 AT5G51990 201 / 8e-65 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.012G134100 [exp] 127 / 4e-36 AT5G51990 197 / 4e-63 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.015G136400 [exp] 121 / 1e-33 AT5G51990 189 / 2e-60 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.004G187001 [exp] 118 / 4e-32 AT4G25490 124 / 1e-34 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Potri.009G147700 [exp] 118 / 4e-32 AT4G25480 108 / 3e-28 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) Potri.001G110800 [exp] 111 / 6e-30 AT4G25470 164 / 4e-50 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) Potri.003G121200 [exp] 105 / 2e-28 AT5G52020 149 / 2e-45 Integrase-type DNA-binding superfamily protein (.1) Potri.003G079300 [exp] 101 / 3e-26 AT4G16750 150 / 7e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.016G018600 [exp] 100 / 6e-26 AT2G36450 135 / 7e-40 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.001G155700 [exp] 99 / 3e-25 AT2G44940 159 / 1e-47 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10027722 pacid=23156869 polypeptide=Lus10027722 locus=Lus10027722.g ID=Lus10027722.BGIv1.0 annot-version=v1.0 ATGGATTACTGCTCCGTCGACGACGAGGGGACGATACAGCCATCGTCTAGTAGTGGCGCCGGAAACGACCAGAATCGTTCGTCGCCGTCGGCTTCTCCGC CGCCGCCGAAGCGAAAGACGGGGAGGAAGAAGTTCCAGGAGACACGTCACCCGGTATACAAAGGCGTGCGGCGGAGAAACGGCAAGTGGGTGTGCGAAAT ACGGCATCCGCAAAACAACAAGTCACGAATATGGCTAGGGACGTTCACGTGCCCTGAGCCCGCCGGAAAGGCACATGACGTGGCGGCTTTGGCTCTAGGA GCCGAGGTGGGGAAGCTGAACTTCCCCGAGTTGGCTCATGTACTGCCTCGGGCGAGGTCGGACTCCATAAGCGATATTCAATGTGCCGTGGCTACGGTGA GGACCGCGGTAAACGGCGGTGGTGGTGGTGACGTAGAGGGTGAGAATTTGAGGAGGATGACGTTGGAAGTGGAGACTAATTATAGTGGTGACACGATGAT GTTTGTGGACGAGGAGGAGATATTCAACATGCCGGTTTTGTTGGATAGTATGGCGGAGGGGTTGCTAGTTACGCCGCCGGCGATGAAGAGAGGGTGGTTT TGGAATGAGGTGGTGGATGATGGGGATGAGCATTGCATGGACTTGACATTGTGGACTCATTGA
AA sequence Show only first row Show all	>Lus10027722 pacid=23156869 polypeptide=Lus10027722 locus=Lus10027722.g ID=Lus10027722.BGIv1.0 annot-version=v1.0 MDYCSVDDEGTIQPSSSSGAGNDQNRSSPSASPPPPKRKTGRKKFQETRHPVYKGVRRRNGKWVCEIRHPQNNKSRIWLGTFTCPEPAGKAHDVAALALG AEVGKLNFPELAHVLPRARSDSISDIQCAVATVRTAVNGGGGGDVEGENLRRMTLEVETNYSGDTMMFVDEEEIFNMPVLLDSMAEGLLVTPPAMKRGWF WNEVVDDGDEHCMDLTLWTH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25470	AP2_ERF	DREB1C, FTQ4, C...	FREEZING TOLERANCE QTL 4, DRE/...		Lus10027722 [exp]	0	1
AT1G73920			alpha/beta-Hydrolases superfam...		Lus10032477 [exp]	1.7	0.8192
AT5G39130			RmlC-like cupins superfamily p...		Lus10003267 [exp]	12.2	0.7878
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016225 [exp]	15.3	0.7707
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016224 [exp]	15.5	0.7605
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10037866 [exp]	18.5	0.7693
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10009129 [exp]	20.4	0.7634
AT4G35220			Cyclase family protein (.1)		Lus10027872 [exp]	24.0	0.7589
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	25.9	0.7586
AT5G41761			unknown protein		Lus10017552 [exp]	27.5	0.7586
					Lus10028570 [exp]	29.0	0.7586

Compare expression of checked genes

Lus10027722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.