Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09220 697 / 0 LAC7 laccase 7 (.1) AT5G01040 647 / 0 LAC8 laccase 8 (.1) AT5G01050 639 / 0 Laccase/Diphenol oxidase family protein (.1) AT5G05390 597 / 0 LAC12 laccase 12 (.1) AT2G40370 597 / 0 LAC5 laccase 5 (.1) AT2G30210 566 / 0 LAC3 laccase 3 (.1) AT5G60020 553 / 0 LAC17, ATLAC17 laccase 17 (.1) AT2G29130 552 / 0 LAC2, ATLAC2 laccase 2 (.1) AT5G07130 536 / 0 LAC13 laccase 13 (.1) AT2G38080 535 / 0 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035546 [exp] 1076 / 0 AT3G09220 710 / 0.0 laccase 7 (.1) Lus10017427 [exp] 577 / 0 AT2G40370 894 / 0.0 laccase 5 (.1) Lus10019122 [exp] 570 / 0 AT5G60020 938 / 0.0 laccase 17 (.1) Lus10034439 [exp] 565 / 0 AT5G60020 943 / 0.0 laccase 17 (.1) Lus10034614 [exp] 559 / 0 AT5G60020 934 / 0.0 laccase 17 (.1) Lus10026512 [exp] 551 / 0 AT5G03260 919 / 0.0 laccase 11 (.1) Lus10023189 [exp] 550 / 0 AT5G03260 930 / 0.0 laccase 11 (.1) Lus10002227 [exp] 547 / 0 AT5G03260 926 / 0.0 laccase 11 (.1) Lus10009841 [exp] 540 / 0 AT5G05390 811 / 0.0 laccase 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G094100 [exp] 780 / 0 AT3G09220 691 / 0.0 laccase 7 (.1) Potri.016G106300 [exp] 741 / 0 AT3G09220 676 / 0.0 laccase 7 (.1) Potri.016G106000 [exp] 733 / 0 AT3G09220 686 / 0.0 laccase 7 (.1) Potri.016G106100 [exp] 727 / 0 AT3G09220 672 / 0.0 laccase 7 (.1) Potri.008G073700 [exp] 614 / 0 AT2G40370 946 / 0.0 laccase 5 (.1) Potri.010G183600 [exp] 613 / 0 AT2G40370 937 / 0.0 laccase 5 (.1) Potri.010G183500 [exp] 611 / 0 AT5G05390 915 / 0.0 laccase 12 (.1) Potri.008G073800 [exp] 607 / 0 AT5G05390 893 / 0.0 laccase 12 (.1) Potri.013G152700 [exp] 590 / 0 AT2G30210 916 / 0.0 laccase 3 (.1) Potri.019G124300 [exp] 576 / 0 AT2G30210 845 / 0.0 laccase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10027747 pacid=23157055 polypeptide=Lus10027747 locus=Lus10027747.g ID=Lus10027747.BGIv1.0 annot-version=v1.0 ATGAAGGGGCTTATGTTCCTTCTCGCATGTGCTCTAGCCTTCCTGGCTTGCTCCCCTCCTCCTTTTGCTTATGGAGCTGTCGTCGAGCACACTTTCGATG TGCAAAATCGGACTCTTAGGTTGTTGTGCGGCCAACAAGTAGTGCCTACCGTGAATGGAAGTGTGCCTGGACCGACTATTCGAGTTCAAGATGGAGACAC TCTCGTGGTTCATGTCGTCAACAATTCGCCTTACAACATTAGTATTCATTGGCATGGAATTTTCCAAATGCTGAGCGGATGGGCAGACGGACCCAACATG ATAACCCAGTGCCCGATCCGACCAGGAGGAACTTACACCTATAAATTCACCATCACGGGTCAAGAAGGCACTCTTTGGTGGCACGCTCACGTGTCAACTC TTCGTGCCACGGTTTATGGTGCCCTTATTATCCGACCCAAATCCGGAAACCCTTACCCGTTTCCCAAACCTGACAAGGAAGTCCCTATCATCCTTGGAGA ATGGTGGAATGCTAATGTCGTCGATGTTGAGGCCCAGGCTCTGGCCACCGGTGGCGGACCGAACACCTCTGATGCCTACACCATTAACGGCTTCCCTGGA AACCTCTACCCTTGTTCCCAAACCAAAATGTTCAACCTGACAGTGGAGAAAGGAAAGACATATATGTTGAGGATCATCAACGCTGCACTCAACAACCAGC TCTTCTTCAAAATCGCCAACCACAAGTTCACAGTCGTGGCAGTCGATGCAGCTTACACTACTCCGTACAAAACTGACGTCGTATTAGTCGCCCCGGGTCA AACCACTGACGTGCTCCTAGAAGCTGACCAAGCAATCGGATCCTACTACATGGCCGCTCGGCCTTACGCCAGCGCACCAGGTGTTCCATTCGCCAACACC ACCACAAGAGGCCTAATTACTTACAAAGGCTCGTCAAGTTCGACTCCACAAATGCCGATATTACCTGCATTTAACGACACTCCGACCGCGTTCAAGTTCA ACTCGAACATCACTAGTGATGCCTCTGCGAGACATTGGGTGCCTGTCCCCGCTGATGTGGACAGGCACATGTTCGTCACAGTCGGGCTAGGGCTCGAGCC CTGCACAACCGGTAACGGGACCTGTCAGGGTCCCAACGGGCAGAAGTTTGCTGCTAGTATGAACAATGTGTCATTCCAATTCCCAACGACTCTGTCATTG TTGCAAGCCTTTTCGGGCAAAGTTGGTGGGGTTTACACCAGGGATTTCCCTGCTACGCCATTGTTGAAGCTGGACCACACGAATCCGAACATTAACAACG ATACACAGCTGTTGTTCGTCAAGAAGGGGACGAAAGTTACGAAGCTGAAGTATAATGAGACTGTGGAGATGGTGCTGCAGAACACTGCTATACTGACTGT CGAGAATCACCCTATCCATATCCACGGGTTCAATTTCCATGTCTTGGCTCAAGGGTTTGGGAACTACGACAAGGTGAACGGCCCCAAGAAGTTCAATCTG GTTAACCCGCAAATCCGTAACACCATCGGAGTTCCTGTTGGGGGATGGGCTGTTGTCCGATTCCAGGCTAACAATCCAGGAATTTGGTTCATGCATTGCC ATCTGGATGCTCACTTGCCGTGGGGATTGGCTATGGCGTGGGAGGTGGAGAATGGGCCGACTCCGGGAACCAGGCTGCCGCCGCCACCGGCTGATTTGCC CAAGTGTTAA
AA sequence Show only first row Show all	>Lus10027747 pacid=23157055 polypeptide=Lus10027747 locus=Lus10027747.g ID=Lus10027747.BGIv1.0 annot-version=v1.0 MKGLMFLLACALAFLACSPPPFAYGAVVEHTFDVQNRTLRLLCGQQVVPTVNGSVPGPTIRVQDGDTLVVHVVNNSPYNISIHWHGIFQMLSGWADGPNM ITQCPIRPGGTYTYKFTITGQEGTLWWHAHVSTLRATVYGALIIRPKSGNPYPFPKPDKEVPIILGEWWNANVVDVEAQALATGGGPNTSDAYTINGFPG NLYPCSQTKMFNLTVEKGKTYMLRIINAALNNQLFFKIANHKFTVVAVDAAYTTPYKTDVVLVAPGQTTDVLLEADQAIGSYYMAARPYASAPGVPFANT TTRGLITYKGSSSSTPQMPILPAFNDTPTAFKFNSNITSDASARHWVPVPADVDRHMFVTVGLGLEPCTTGNGTCQGPNGQKFAASMNNVSFQFPTTLSL LQAFSGKVGGVYTRDFPATPLLKLDHTNPNINNDTQLLFVKKGTKVTKLKYNETVEMVLQNTAILTVENHPIHIHGFNFHVLAQGFGNYDKVNGPKKFNL VNPQIRNTIGVPVGGWAVVRFQANNPGIWFMHCHLDAHLPWGLAMAWEVENGPTPGTRLPPPPADLPKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09220		LAC7	laccase 7 (.1)		Lus10027747 [exp]	0	1
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10037205 [exp]	1.4	0.9857
					Lus10027919 [exp]	1.7	0.9841
AT3G09220		LAC7	laccase 7 (.1)		Lus10035546 [exp]	5.4	0.9705
AT3G48180			unknown protein		Lus10043469 [exp]	5.7	0.9848
					Lus10020455 [exp]	6.6	0.9774
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10006718 [exp]	7.1	0.9787
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10023824 [exp]	7.7	0.9829
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10027586 [exp]	11.0	0.9766
AT1G76680		OPR1, ATOPR1	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10001276 [exp]	11.8	0.9812
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10020023 [exp]	12.8	0.9827

Compare expression of checked genes

Lus10027747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.