Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027765 [exp] 566 / 0 AT5G48385 79 / 6e-15 FRIGIDA-like protein (.1) Lus10027766 [exp] 407 / 4e-127 AT5G01270 820 / 0.0 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2) Lus10027763 [exp] 278 / 1e-85 AT5G27220 53 / 4e-07 Frigida-like protein (.1) Lus10035523 [exp] 126 / 6e-34 ND / Lus10035529 [exp] 84 / 6e-18 ND 39 / 0.001 Lus10017320 [exp] 84 / 3e-16 AT5G58340 76 / 8e-14 myb-like HTH transcriptional regulator family protein (.1.2) Lus10017319 [exp] 80 / 1e-15 AT5G58340 66 / 2e-11 myb-like HTH transcriptional regulator family protein (.1.2) Lus10033831 [exp] 74 / 2e-13 AT5G27220 153 / 2e-37 Frigida-like protein (.1) Lus10003566 [exp] 61 / 2e-09 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G044200 [exp] 91 / 1e-18 AT5G27220 129 / 5e-30 Frigida-like protein (.1) Potri.013G154500 [exp] 59 / 1e-08 AT5G58340 88 / 4e-18 myb-like HTH transcriptional regulator family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10027773 pacid=23156935 polypeptide=Lus10027773 locus=Lus10027773.g ID=Lus10027773.BGIv1.0 annot-version=v1.0 ATGGAGAAGGTGATGGATGATCTGAAGCTGGCTGAAGCAAATCAAGGGAGTTTGTCCAAGTTGATGAACGAACTCCAGTCGAAATCTTCATTGATCCTTT CCTTCGCCCTTCACTGGAAAGACTTAGACTTGCAGTATCACACCATAAGGGAGGCATTACACCAACAGGCGCAAGAACTCGCCCTGCAAAGAACCGAAAT TGAAGAAGCTCGAAAGAAGGTTGAGCTACATGAAACCGAGGTTCTGGTTAAGCTGGAAACCCCTCATTGTGATATAGGTGTGCTTGATTCGAAGCTGGAT TCGAAGAAGAAGGAGCTTCAGAAGAAGGAGAGGGATTTGAGGTTTGTTCTAGAAAGGGCTGAAGATTGTGAAGTTGAACTCGAAAGGAAAGAGATGGAGA TGGGGGTTTTGGAGAAGGCACTGACTAAGATCCGCAAACAGATATGCGAGAGAGAAGGAGAAATGGATTGTGTTCAGAAGTCTATCGAGTCGAAGGCAAC GGAGCTGGAGGCAAAAGAGATGGAATTGTGTGAGCTTGAGCTGGAAGTTAGTGGGAAAAGGGAAGAACTTTGTTCATTAGACAAGTCTCTAGCTCTAAGA CATGATGATATGGATAGACTAGGGAATTTGAATTCGAATCGTACTTCCGAGCTCGAGGCGAAGGAGAAAGAGTTGGCTGAGGTAAGTGCCCTGATCACTG AACTCAAAGCTGAGTGCGAATTGAATGAGAGACATCTGATTACCGTGGTAGATAACCTCGAGGAAAAAGAGAGAAACTTGGCTGAGGTAAAGAATGAGAT TATGAACCTAAGTGGTGTCTGTGAATTAAAAGAGGCAGAGTTTGCTTCTGTAAAGAACTTGATGACCGAACGCACAGCTCAGCTCGAATCGAGAGAGGAG CAGTTGAGCTCAGTGGCTGAGGAGCTTGAGGAAAAACAACGACTGCTGGAATTTGTAGACAAGGCATTGGTAGTTAATACTGGAGATGTCTATGCTAAAG AGAAAGAACTATTTGCATTACAGAAACAAGTTTCAGTTGTTAATTCTGAGCATAAGTTGAAGGAGGAGGAGTTGGCTGCGTTACAGGACAAAATTCAGTT CTTCTGTAAAGAGATTGACATGAAGGAAGCTGAATTCTCTGGTATCAAAGCTTCCATTGAGGAATGCCTCAAGGATTTGGATATGAAGAAGGAAGAACTC AATGCAACCGAAAACTTGTCTGAGAAGCAACACGACGAGATTTATTTGAACCAATTTCGTCTTGATTCTATTAGTGAGTTGGTTAAGGAATATGATGAAG AACTTGAATCGAAGGAAAAGGAGCTTGAATTGAAAGAGACTGCGTTAAGTAGCATTGAAACATCCATCAAAGGTCGAGACAAAGTGCTCAGAGTGAAGAA GAATCCGCATACTTTTATTCAATCGAAGATACACAAGTGCAGCAAAGAGCTTGAATCAATGAAGGACCAGACAATTTCAATAAAGACATTGATTGAAGAA TTCGCTCTTGCTCTCGAGTCTAGTGTTGAGAAGACTGTCGACTTGGCTGGAGAACGAATGAAGCAATGCTTTGAATCGGAAAAAATGGAGCTTATTGAAA TGCGAAACAAGCTTACAGAGAAAAGAACGAATGTGGAAGAACGTGGTGTAGCAGTTGAAACGGAGAGGCTGGAGCTTCAGAAAGAAGTTGAACGGTTCGA TTTGAGCAAAGAAGAATTGGTTTTGAAAGAAAAAGTGATGGAAGAACGAGTTGCAGAAATAGAAGCGAAAGAAAAGCAACTAAGCAAGTTGTTGGATGAG CATCAGAGAAACAAACAGCTACCTGAAACTGGAAAAGAATTCGTTGTTTATGCAGCGGTGAATGATCTTCTTCCAAGTGTTCGAATGGATGTTTCAGTTT GCAGCTCGGTCCATGGACCATCTCACGGTCGAAGAAAACGAACTCGAACACAATGTCAAAAGAAAGACCTCGTGCCTCCATTGGCAAAAAAGGCGAGGAG AAAAATGAATCGATGGACCGCTGTGGAGGAAAAAGCCCTGGCTGATGGCGTGAAAGAGTATGGAAGTGGCTCCTGGAAGCTAATATTGGAGTCAAGACAA GAAGTATTTGTTGAGAGGACTCAGGTTTATACATATACACCGACTCCCTCCCGAACTGTAACTATTACAAAGCATGGCTTTTGA
AA sequence Show only first row Show all	>Lus10027773 pacid=23156935 polypeptide=Lus10027773 locus=Lus10027773.g ID=Lus10027773.BGIv1.0 annot-version=v1.0 MEKVMDDLKLAEANQGSLSKLMNELQSKSSLILSFALHWKDLDLQYHTIREALHQQAQELALQRTEIEEARKKVELHETEVLVKLETPHCDIGVLDSKLD SKKKELQKKERDLRFVLERAEDCEVELERKEMEMGVLEKALTKIRKQICEREGEMDCVQKSIESKATELEAKEMELCELELEVSGKREELCSLDKSLALR HDDMDRLGNLNSNRTSELEAKEKELAEVSALITELKAECELNERHLITVVDNLEEKERNLAEVKNEIMNLSGVCELKEAEFASVKNLMTERTAQLESREE QLSSVAEELEEKQRLLEFVDKALVVNTGDVYAKEKELFALQKQVSVVNSEHKLKEEELAALQDKIQFFCKEIDMKEAEFSGIKASIEECLKDLDMKKEEL NATENLSEKQHDEIYLNQFRLDSISELVKEYDEELESKEKELELKETALSSIETSIKGRDKVLRVKKNPHTFIQSKIHKCSKELESMKDQTISIKTLIEE FALALESSVEKTVDLAGERMKQCFESEKMELIEMRNKLTEKRTNVEERGVAVETERLELQKEVERFDLSKEELVLKEKVMEERVAEIEAKEKQLSKLLDE HQRNKQLPETGKEFVVYAAVNDLLPSVRMDVSVCSSVHGPSHGRRKRTRTQCQKKDLVPPLAKKARRKMNRWTAVEEKALADGVKEYGSGSWKLILESRQ EVFVERTQVYTYTPTPSRTVTITKHGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10027773 [exp]	0	1
AT2G21910		CYP96A5	"cytochrome P450, family 96, s...		Lus10018158 [exp]	2.0	0.8831
AT3G19610			Plant protein of unknown funct...		Lus10012367 [exp]	2.8	0.8138
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10040226 [exp]	7.2	0.8622
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10021233 [exp]	14.7	0.8269
					Lus10022721 [exp]	17.3	0.8054
					Lus10003941 [exp]	20.5	0.7421
AT5G65165		SDH2-3	succinate dehydrogenase 2-3 (....		Lus10028289 [exp]	20.7	0.8056
AT1G48020		ATPMEI1	ARABIDOPSIS THALIANA PECTIN ME...		Lus10001658 [exp]	21.2	0.7421
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10039560 [exp]	21.8	0.7421
AT4G04960			Concanavalin A-like lectin pro...		Lus10039837 [exp]	22.4	0.7421

Compare expression of checked genes

Lus10027773 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.