Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38090 207 / 6e-66 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT5G01200 184 / 1e-57 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G58900 181 / 6e-56 MYB Homeodomain-like transcriptional regulator (.1) AT5G05790 171 / 3e-52 MYB Duplicated homeodomain-like superfamily protein (.1) AT3G11280 164 / 9e-50 MYB Duplicated homeodomain-like superfamily protein (.1.2) AT5G08520 145 / 4e-42 MYB Duplicated homeodomain-like superfamily protein (.1) AT1G49010 144 / 1e-41 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G04760 132 / 5e-38 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G23650 118 / 2e-31 MYB Homeodomain-like transcriptional regulator (.1) AT5G47390 119 / 3e-31 MYB myb-like transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035518 [exp] 442 / 8e-159 AT2G38090 304 / 1e-103 Duplicated homeodomain-like superfamily protein (.1) Lus10018209 [exp] 212 / 7e-68 AT5G58900 302 / 9e-103 Homeodomain-like transcriptional regulator (.1) Lus10040696 [exp] 209 / 1e-66 AT5G58900 306 / 2e-104 Homeodomain-like transcriptional regulator (.1) Lus10014837 [exp] 176 / 3e-54 AT3G11280 242 / 7e-80 Duplicated homeodomain-like superfamily protein (.1.2) Lus10009884 [exp] 175 / 1e-53 AT3G11280 246 / 4e-81 Duplicated homeodomain-like superfamily protein (.1.2) Lus10028264 [exp] 159 / 2e-47 AT3G11280 221 / 1e-71 Duplicated homeodomain-like superfamily protein (.1.2) Lus10036413 [exp] 143 / 1e-41 AT5G04760 234 / 3e-78 Duplicated homeodomain-like superfamily protein (.1) Lus10041001 [exp] 138 / 3e-39 AT5G08520 354 / 4e-123 Duplicated homeodomain-like superfamily protein (.1) Lus10013447 [exp] 138 / 5e-39 AT5G08520 350 / 2e-121 Duplicated homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G112300 [exp] 259 / 2e-86 AT2G38090 358 / 9e-125 Duplicated homeodomain-like superfamily protein (.1) Potri.006G097300 [exp] 254 / 2e-84 AT2G38090 355 / 2e-123 Duplicated homeodomain-like superfamily protein (.1) Potri.001G248800 [exp] 210 / 4e-67 AT5G58900 312 / 1e-106 Homeodomain-like transcriptional regulator (.1) Potri.009G042600 [exp] 206 / 1e-65 AT5G58900 307 / 1e-104 Homeodomain-like transcriptional regulator (.1) Potri.010G193000 [exp] 180 / 1e-55 AT2G38090 258 / 2e-85 Duplicated homeodomain-like superfamily protein (.1) Potri.008G064200 [exp] 177 / 2e-54 AT5G05790 267 / 3e-89 Duplicated homeodomain-like superfamily protein (.1) Potri.012G060300 [exp] 147 / 6e-43 AT1G49010 217 / 3e-69 Duplicated homeodomain-like superfamily protein (.1) Potri.005G087700 [exp] 141 / 1e-40 AT5G08520 304 / 2e-103 Duplicated homeodomain-like superfamily protein (.1) Potri.007G076200 [exp] 139 / 8e-40 AT5G08520 293 / 6e-99 Duplicated homeodomain-like superfamily protein (.1) Potri.001G219100 [exp] 132 / 6e-38 AT5G04760 217 / 2e-71 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10027781 pacid=23156956 polypeptide=Lus10027781 locus=Lus10027781.g ID=Lus10027781.BGIv1.0 annot-version=v1.0 ATGGAGAGAGGGATGGAAATCCTATCGCCGGCATCCTGTCGCCGGCGTCCTACCTGCAGAACTCAGGGTGGCTGTTCCAGGAGAGCAAGAGGCCGAAATG GACGAGCGAAGAGAACAAGAGTCGGCGACGTGATCAAACAGTACAGGGAGCTTGAAGAAGACGTCAGTGACATAGAGGCTGGACTTATCCCTGTTCCTGC TGGATTCGACGTCGGTTCTGCTGATTCTTTTACTCTGGAATTGGTCAATAGTCATAGCTACGATGAGCTTAAGGAATTCTACAGTCCTGGTGGCAAAAGG ACTCGTGCTTGTGAGCAGGAACGCAAGAGAGGTGTCCCTTGGACTGAAGAAGAACATAGGCAGTTCCTGCTGGGACTAGAGAAGTATGGCAAAGGAGACT GGAGGAACATATCTCGAAACTTTGTGATGACGAGGACGCCAACACAGGTAGCTAGCCATGCTCAGAAGTACTTCATCAGGCAGAGCACAGGTGGGAAAGA CAAGAAGAGATCAAGCATCCATGATATCACCACTGTCAATCATCCTACAGACTCCAAGCAGCAGCTGCATTCTTCCCCAGATCACTCAACAACCACCATG GATACAAAACTCGACACGAATGTGATGATGGGAGGAGCAAATGTATGCGGTATGATGTCGTCAAGCTCGCCTTATGGACTGCAGCTGCAGGAACAGAAGA GCCTGATTCTGATGGGAGGGCCACCGAGCTATGGCTTGGTGTATCAGCAGATGCAATCAATGCAGAACCAGTAG
AA sequence Show only first row Show all	>Lus10027781 pacid=23156956 polypeptide=Lus10027781 locus=Lus10027781.g ID=Lus10027781.BGIv1.0 annot-version=v1.0 MERGMEILSPASCRRRPTCRTQGGCSRRARGRNGRAKRTRVGDVIKQYRELEEDVSDIEAGLIPVPAGFDVGSADSFTLELVNSHSYDELKEFYSPGGKR TRACEQERKRGVPWTEEEHRQFLLGLEKYGKGDWRNISRNFVMTRTPTQVASHAQKYFIRQSTGGKDKKRSSIHDITTVNHPTDSKQQLHSSPDHSTTTM DTKLDTNVMMGGANVCGMMSSSSPYGLQLQEQKSLILMGGPPSYGLVYQQMQSMQNQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Lus10027781 [exp]	0	1
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Lus10035518 [exp]	1.0	0.8886
AT3G25110		ATFATA	fatA acyl-ACP thioesterase (.1...		Lus10038190 [exp]	2.4	0.8384
AT1G61350			ARM repeat superfamily protein...		Lus10018423 [exp]	2.6	0.8293
AT5G62890			Xanthine/uracil permease famil...		Lus10042138 [exp]	3.2	0.8447
AT1G61350			ARM repeat superfamily protein...		Lus10002598 [exp]	3.5	0.8539
AT2G46420			Plant protein 1589 of unknown ...		Lus10030264 [exp]	5.3	0.8672
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10022833 [exp]	5.7	0.8471
AT1G67050			unknown protein		Lus10028485 [exp]	7.7	0.8219
AT5G62890			Xanthine/uracil permease famil...		Lus10004228 [exp]	8.1	0.8155
AT1G69690	TCP	AtTCP15, TCP15	TEOSINTE BRANCHED1/CYCLOIDEA/P...		Lus10037190 [exp]	12.4	0.7850

Compare expression of checked genes

Lus10027781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.