Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01060 173 / 4e-53 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT5G06800 149 / 6e-43 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT4G28610 142 / 3e-40 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT3G24120 140 / 3e-40 GARP Homeodomain-like superfamily protein (.1.2) AT4G13640 139 / 9e-40 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT1G69580 135 / 3e-38 GARP Homeodomain-like superfamily protein (.1.2) AT5G29000 135 / 1e-37 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) AT5G18240 135 / 2e-37 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5) AT3G04030 134 / 3e-37 GARP Homeodomain-like superfamily protein (.1.2.3) AT3G13040 134 / 6e-37 GARP myb-like HTH transcriptional regulator family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005036 [exp] 413 / 3e-148 AT2G01060 175 / 4e-54 myb-like HTH transcriptional regulator family protein (.1.2) Lus10002483 [exp] 304 / 8e-105 AT2G01060 168 / 6e-51 myb-like HTH transcriptional regulator family protein (.1.2) Lus10004809 [exp] 301 / 8e-104 AT2G01060 171 / 5e-52 myb-like HTH transcriptional regulator family protein (.1.2) Lus10039124 [exp] 167 / 1e-50 AT2G01060 350 / 6e-122 myb-like HTH transcriptional regulator family protein (.1.2) Lus10038734 [exp] 156 / 1e-46 AT2G01060 324 / 1e-111 myb-like HTH transcriptional regulator family protein (.1.2) Lus10024938 [exp] 148 / 8e-42 AT4G28610 314 / 2e-103 phosphate starvation response 1 (.1) Lus10022886 [exp] 145 / 6e-41 AT4G28610 310 / 7e-102 phosphate starvation response 1 (.1) Lus10016676 [exp] 142 / 1e-40 AT4G13640 380 / 2e-133 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10007132 [exp] 141 / 2e-40 AT4G13640 390 / 3e-137 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G117000 [exp] 264 / 2e-89 AT2G01060 173 / 4e-53 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G101000 [exp] 263 / 1e-88 AT2G01060 179 / 2e-55 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G000800 [exp] 175 / 2e-53 AT2G01060 321 / 1e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G001100 [exp] 173 / 5e-53 AT2G01060 318 / 5e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G191000 [exp] 142 / 4e-40 AT5G06800 252 / 2e-80 myb-like HTH transcriptional regulator family protein (.1.2) Potri.017G054800 [exp] 139 / 5e-40 AT4G13640 338 / 6e-117 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.001G314800 [exp] 139 / 6e-40 AT4G13640 345 / 2e-119 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.019G020900 [exp] 141 / 2e-39 AT5G29000 306 / 4e-101 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.014G000700 [exp] 141 / 2e-39 AT3G13040 308 / 6e-101 myb-like HTH transcriptional regulator family protein (.1.2) Potri.019G032700 [exp] 140 / 3e-39 AT3G04030 449 / 2e-157 Homeodomain-like superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10027806 pacid=23156889 polypeptide=Lus10027806 locus=Lus10027806.g ID=Lus10027806.BGIv1.0 annot-version=v1.0 ATGGTTTCCAGACGCTCAGATGGTGCCGGCAAGGACCGATTGAGGTGGACGCAAGAGCTACATGACCGATTTGAAGAAGCTGTCACTCAGCTTGGTGGCC CTGATAGGGCTACTCCCAAAGGTATCCTGAAGTCTATGGGCATTTCTGGACTGACAATCTACCATGTCAAGAGCCACTTGCAGAAATACAGAATCTCCAA GTTTATCCCAGAAACGCCCAACAGAGGAATGGAGAGGAGAAACATTTCAGAGATGCTGCCGAATTTCAGTGCCACATCAGGAGCTCAACTCAACGAAGCA CTTCAAATGCAGCTCGAAGTGGAGAGGCGCCTCAGCGACCACCTTGAGGTACAGAGAAGCCTGAAGGTGAAGATCGAAGCACAGGGAAGGTTCCTGGAGA GGATAGTGGAAGAACATAAGAACAGCAACAGATCATCATCAGCTGCTTTCTCGAAACCAATGATGAAGCCTCTCCCAACCATGTCATTGCCTTCCCTCGA GTCCGAGTCGGACTCGGAAGGAGACAGGCTTAATGAAGTCCAATCATCATCAGCAGCACAGGATTTCAGGCCTCTCAAGAGACTCAGATCAGAGAACGAC CTTCTCCCGCCGCGCTACAGGGTGTCTGCTGCTCAAGGGAAGAACTTGGGCTGGAACAGCATCAACAACAACAACATGGTGTCCTGTCCTCCATCTTTGG TCCCAAGCTTTTACTGA
AA sequence Show only first row Show all	>Lus10027806 pacid=23156889 polypeptide=Lus10027806 locus=Lus10027806.g ID=Lus10027806.BGIv1.0 annot-version=v1.0 MVSRRSDGAGKDRLRWTQELHDRFEEAVTQLGGPDRATPKGILKSMGISGLTIYHVKSHLQKYRISKFIPETPNRGMERRNISEMLPNFSATSGAQLNEA LQMQLEVERRLSDHLEVQRSLKVKIEAQGRFLERIVEEHKNSNRSSSAAFSKPMMKPLPTMSLPSLESESDSEGDRLNEVQSSSAAQDFRPLKRLRSEND LLPPRYRVSAAQGKNLGWNSINNNNMVSCPPSLVPSFY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10027806 [exp]	0	1
AT5G67140			F-box/RNI-like superfamily pro...		Lus10024178 [exp]	18.8	0.7588
AT3G56320			PAP/OAS1 substrate-binding dom...		Lus10034219 [exp]	25.8	0.7593
AT1G72990		BGAL17	beta-galactosidase 17 (.1.2)		Lus10015616 [exp]	27.0	0.7344
AT1G62700	NAC	ANAC026, VND5	VASCULAR RELATED NAC-DOMAIN PR...		Lus10004338 [exp]	31.7	0.7106
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10024661 [exp]	32.6	0.7591
AT4G00290			Mechanosensitive ion channel p...		Lus10005121 [exp]	37.3	0.7487
AT5G06440			unknown protein		Lus10029361 [exp]	46.9	0.7565
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Lus10003178 [exp]	50.5	0.7302
AT1G06980			unknown protein		Lus10036859 [exp]	59.7	0.7297
					Lus10022051 [exp]	62.8	0.6871

Compare expression of checked genes

Lus10027806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.