Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49670 954 / 0 NQR ARP protein (REF) (.1), ARP protein (REF) (.2) AT5G16960 109 / 6e-26 Zinc-binding dehydrogenase family protein (.1) AT5G16980 106 / 1e-25 Zinc-binding dehydrogenase family protein (.1.2) AT5G16970 107 / 2e-25 AT-AER alkenal reductase (.1) AT5G16990 107 / 3e-25 Zinc-binding dehydrogenase family protein (.1) AT5G17000 104 / 3e-24 Zinc-binding dehydrogenase family protein (.1) AT1G26320 103 / 7e-24 Zinc-binding dehydrogenase family protein (.1.2) AT5G37980 103 / 1e-23 Zinc-binding dehydrogenase family protein (.1) AT3G03080 103 / 1e-23 Zinc-binding dehydrogenase family protein (.1) AT5G61510 103 / 2e-23 GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002406 [exp] 1273 / 0 AT1G49670 948 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Lus10004379 [exp] 120 / 1e-29 AT5G17000 487 / 4e-174 Zinc-binding dehydrogenase family protein (.1) Lus10004380 [exp] 115 / 6e-28 AT5G37980 477 / 4e-170 Zinc-binding dehydrogenase family protein (.1) Lus10010989 [exp] 113 / 3e-27 AT5G16990 483 / 2e-172 Zinc-binding dehydrogenase family protein (.1) Lus10010988 [exp] 113 / 4e-27 AT5G16990 486 / 6e-174 Zinc-binding dehydrogenase family protein (.1) Lus10028988 [exp] 112 / 5e-27 AT3G56460 508 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10007832 [exp] 112 / 9e-27 AT5G16990 464 / 3e-165 Zinc-binding dehydrogenase family protein (.1) Lus10040177 [exp] 111 / 2e-26 AT5G37980 480 / 3e-171 Zinc-binding dehydrogenase family protein (.1) Lus10030087 [exp] 110 / 3e-26 AT5G16990 336 / 1e-114 Zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G103000 [exp] 1066 / 0 AT1G49670 943 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Potri.019G065700 [exp] 113 / 4e-27 AT3G56460 525 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.010G177700 [exp] 112 / 8e-27 AT1G65560 514 / 0.0 Zinc-binding dehydrogenase family protein (.1) Potri.004G233800 [exp] 110 / 3e-26 AT5G61510 527 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.007G143700 [exp] 109 / 1e-25 AT5G16970 495 / 2e-177 alkenal reductase (.1) Potri.001G140600 [exp] 107 / 3e-25 AT5G61510 542 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.017G002300 [exp] 106 / 7e-25 AT1G26320 488 / 2e-174 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G142400 [exp] 106 / 1e-24 AT5G16990 491 / 1e-175 Zinc-binding dehydrogenase family protein (.1) Potri.017G002700 [exp] 105 / 1e-24 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G006000 [exp] 105 / 1e-24 AT5G37980 493 / 2e-176 Zinc-binding dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10027904 pacid=23157048 polypeptide=Lus10027904 locus=Lus10027904.g ID=Lus10027904.BGIv1.0 annot-version=v1.0 ATGGAGATTAAACGAGGCCTATCGGCGCTGGTCACCGGCGGTGCCTCCGGTATCGGGAAAGCGCTGAGTTTAGCTCTGGCTGAGAAGGGGATATTTATAA CGGTGGTTGATTTATCAGAGGAAAGAGGGAAAGAAGTTGCGTTCCTTATCGAGAAAGAGCATGCCAAGCTTAGTTCTAAGTTGAATGTTCCGTCCGCTAT CTTTGTGAGATGCGATGTATCAAATTCGAATGAATTAACTGCTGCTTTTGACAAGCATATTGCGACTTATGGAGGGTTGGATATTTGTATTAACTGTGCT GGTATTGGGAATCCCATTCCATTCCAAAATGATGAAACTGATGGCACTAATTCGTGGAAGCGAGCTGTTAATGTCAACCTGGGTGCAGTAATTGACTGTA CTCGCCTTGCGACTAAAGCAATGCAAGCCACAAGAAAACCTGGTGTCATTATAAATTTGGGGTCTGCTTCGGGACTCTATCCAATGTATAATGATCCTAT CTACTCGGCCTCCAAAGGTGGAGTTGTAATGTTTACCAGGTCCCTTACTCCATATAAACGCAAAGGTATCCGCATTAATGTGCTTTGTCCTGAGTTTGTT CAAACTGATATGGGACTAAAGGTGGATGCTAAATTTGTTGATATGATGGGAGGTTTTGTGCCGATGGAAATGGTAATAAAAGGCGCTTTTGAGCTCATTA CTGATGAGAGTAAAGCTGGTTCTTGCCTATGGATTACGAATCGGAGGGGACTTGAATACTGGCCCACTCCTCAAGAAGAGGCAAAATACTTGGCGCGCTC TTCCCATTCAAAGAAGCAAGTATCATTCAAGCTCCCAGTAGATCTCCAGCTTCCACAGAGTTATGAGAAATTAATTGTGCATACTCTAAGCCACAACTTC CGCAATGCCACGCGTGTCGTGCGTGCACCACTGAAGTTGCCTCTTGGATCGCATCAAGTTCTTGTTAAGATCATATATGCTGGAGTAAATGCTAGTGATG TAAACTTCAGCTCAGGCCGTTATTTCTCCGGTGGTGGCAAAGATGTTACCTCCATGCTTCCACTTGATGCTGGTTTTGAGGCAGTGGGCATTGTCGCAGC AGTAGGAGACTCGGTCAGGAACTTGAAAGTTGGAACTCCTGCAGCTATCATGACCTTCGGAAGTTATGCTGAATTTACAGTGGTTTCTTCGAAACATGTC CTTCCTGTACCAAGACCGGATCCGGAAGTTGTTGCAATGCTTACTTCAGGCTTGACAGCTTCAATAGCTCTGGACAAGGCCGGGCAGATGCAATCTGGAC AAGTTGTTCTAGTAACTGCTGCTGCAGGAGGCACCGGGCAATTTGCTGTCCAGCTTGCAAAGTTGGCTGGAAATACAGTGGTTGCGACCTGTGGAGGTCA GGAGAAGGCCAAGCTATTGAAAGACTACGGAGTGGATAGAGTCATTGACTACAGAGCCGAAGATATCAAAACTGTTCTGAAAACCGAGTATCCTAAAGGC ATCGATGTTATCTACGAATCTGTCGGCGGTGACATGTTCGATCTATGTCTGAATGCTCTGGCCGTGTATGGACGTCTGATCGTCATCGGAATGATCTCCA AGTATCAAGGAGAGCATGGATGGACTCCTTCGAATTATACGGGACTCTGCGAGAAGATTCTCGCCAAAAGCCAAACTGTTGCTGGATTTTTCCTGATGAA CTATGCTCAGCTATGGCAAGAACACCTGACCAAACAATTCAACCTTTTCTCCTCAGGAAAACTGAAGATTTCACTAGATCCCAAGAGTTTCGTGGGCGTC GAGTCAGCCAAAGATGCTGTCGAGTATCTCCACTCTGGCAAAAGCGTCGGCAAGGTTGTCGTCTGCATTGATCCATCCTTCAAACGACAGATGGCCAGAC TGTAA
AA sequence Show only first row Show all	>Lus10027904 pacid=23157048 polypeptide=Lus10027904 locus=Lus10027904.g ID=Lus10027904.BGIv1.0 annot-version=v1.0 MEIKRGLSALVTGGASGIGKALSLALAEKGIFITVVDLSEERGKEVAFLIEKEHAKLSSKLNVPSAIFVRCDVSNSNELTAAFDKHIATYGGLDICINCA GIGNPIPFQNDETDGTNSWKRAVNVNLGAVIDCTRLATKAMQATRKPGVIINLGSASGLYPMYNDPIYSASKGGVVMFTRSLTPYKRKGIRINVLCPEFV QTDMGLKVDAKFVDMMGGFVPMEMVIKGAFELITDESKAGSCLWITNRRGLEYWPTPQEEAKYLARSSHSKKQVSFKLPVDLQLPQSYEKLIVHTLSHNF RNATRVVRAPLKLPLGSHQVLVKIIYAGVNASDVNFSSGRYFSGGGKDVTSMLPLDAGFEAVGIVAAVGDSVRNLKVGTPAAIMTFGSYAEFTVVSSKHV LPVPRPDPEVVAMLTSGLTASIALDKAGQMQSGQVVLVTAAAGGTGQFAVQLAKLAGNTVVATCGGQEKAKLLKDYGVDRVIDYRAEDIKTVLKTEYPKG IDVIYESVGGDMFDLCLNALAVYGRLIVIGMISKYQGEHGWTPSNYTGLCEKILAKSQTVAGFFLMNYAQLWQEHLTKQFNLFSSGKLKISLDPKSFVGV ESAKDAVEYLHSGKSVGKVVVCIDPSFKRQMARL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49670		NQR	ARP protein (REF) (.1), ARP pr...		Lus10027904 [exp]	0	1
AT4G30600			signal recognition particle re...		Lus10035066 [exp]	2.0	0.9766
AT1G27450		APRT, ATAPT1, A...	ARABIDOPSIS THALIANA ADENINE P...		Lus10018695 [exp]	2.0	0.9768
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10000052 [exp]	2.8	0.9723
AT1G50480		THFS	10-formyltetrahydrofolate synt...		Lus10013741 [exp]	3.0	0.9753
AT4G18360			Aldolase-type TIM barrel famil...		Lus10023302 [exp]	3.9	0.9723
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10014350 [exp]	5.3	0.9650
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10009169 [exp]	6.7	0.9684
AT1G07160			Protein phosphatase 2C family ...		Lus10041072 [exp]	7.4	0.9678
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10030022 [exp]	8.0	0.9688
AT5G62150			peptidoglycan-binding LysM dom...		Lus10015011 [exp]	8.5	0.9710

Compare expression of checked genes

Lus10027904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.