Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17600 55 / 2e-09 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 55 / 2e-09 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G09430 53 / 1e-08 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G14370 52 / 3e-08 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G63880 51 / 4e-08 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G58120 51 / 4e-08 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G72840 51 / 4e-08 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT2G16870 51 / 5e-08 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G09360 50 / 7e-08 NB-ARC domain-containing disease resistance protein (.1) AT3G04210 49 / 2e-07 Disease resistance protein (TIR-NBS class) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003749 [exp] 155 / 2e-44 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10011104 [exp] 89 / 5e-21 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 62 / 1e-11 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 54 / 8e-09 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018658 [exp] 50 / 2e-07 AT1G27180 360 / 4e-106 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007722 [exp] 49 / 4e-07 AT5G36930 225 / 3e-60 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007811 [exp] 48 / 7e-07 AT5G36930 376 / 1e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007813 [exp] 48 / 8e-07 AT5G36930 368 / 1e-107 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007831 [exp] 47 / 9e-07 AT1G27180 332 / 7e-96 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G098000 [exp] 82 / 5e-19 AT5G17680 575 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069200 [exp] 76 / 1e-16 AT5G17680 590 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G104301 [exp] 74 / 3e-16 AT5G17680 566 / 1e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G097000 [exp] 70 / 2e-14 AT5G17680 571 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G098550 [exp] 68 / 6e-14 AT5G17680 593 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G001600 [exp] 59 / 9e-11 AT5G36930 721 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 59 / 1e-10 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.008G220200 [exp] 58 / 1e-10 AT5G36930 560 / 3e-180 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.017G103701 [exp] 58 / 2e-10 AT5G17680 544 / 5e-170 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G002500 [exp] 58 / 2e-10 AT5G17680 587 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10028041 pacid=23181164 polypeptide=Lus10028041 locus=Lus10028041.g ID=Lus10028041.BGIv1.0 annot-version=v1.0 ATGACACAATCCTCCATGAAGAAGGTACGTCACACTGTGTTTCCTGTCTTTTTCGATGTGGATCCAGGCGACGGTGACTACCGGGAGAGCGCGATTCGTC AACACGAGAAGGATTTCTTGGAGGAGAAGGTCAAGAGATGGGAGGAAGCTCTTAAAGAAGTCATGGATAATATTGTTGGGGTGGTTGTCATGAACAAGGA ACGTTTCGAAAAACACGGACCGACCCACCTCCAAGAACACCTCCTCTCAGACATCCTGATGGACAACAACATCGTACCAATTCGAGACCCCGAGAAAGGG AGAATCTTGATCAAGAAATGCTTGCAGAACAAGAAAGTCCTCATCTTTCTCGACGACGTGGATGACCCAAGCCAACTGGAGATGCTGGCCGTGAATCGAG ACTCGTTTGGTCCGAGGGGTCGGATCGTTGTAACGAGTTGA
AA sequence Show only first row Show all	>Lus10028041 pacid=23181164 polypeptide=Lus10028041 locus=Lus10028041.g ID=Lus10028041.BGIv1.0 annot-version=v1.0 MTQSSMKKVRHTVFPVFFDVDPGDGDYRESAIRQHEKDFLEEKVKRWEEALKEVMDNIVGVVVMNKERFEKHGPTHLQEHLLSDILMDNNIVPIRDPEKG RILIKKCLQNKKVLIFLDDVDDPSQLEMLAVNRDSFGPRGRIVVTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17600			Disease resistance protein (TI...		Lus10028041 [exp]	0	1

Compare expression of checked genes

Lus10028041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.