Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08250 408 / 6e-140 GRAS GRAS family transcription factor (.1) AT3G03450 165 / 1e-45 GRAS RGL2 RGA-like 2 (.1) AT3G54220 166 / 2e-45 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT5G41920 159 / 1e-44 GRAS GRAS family transcription factor (.1) AT5G17490 153 / 2e-41 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G66350 148 / 8e-40 GRAS RGL1 RGA-like 1 (.1) AT3G50650 147 / 3e-39 GRAS SCL7 GRAS family transcription factor (.1) AT1G55580 144 / 1e-38 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT5G66770 145 / 3e-38 GRAS GRAS family transcription factor (.1) AT5G48150 142 / 1e-37 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008316 [exp] 743 / 0 AT4G08250 444 / 5e-152 GRAS family transcription factor (.1) Lus10041540 [exp] 188 / 3e-53 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 187 / 2e-52 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10020857 [exp] 177 / 2e-50 AT4G08250 164 / 3e-45 GRAS family transcription factor (.1) Lus10003540 [exp] 170 / 1e-47 AT3G54220 423 / 1e-141 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10033912 [exp] 170 / 2e-47 AT3G54220 414 / 6e-138 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10016496 [exp] 172 / 3e-47 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10033517 [exp] 167 / 4e-47 AT4G08250 162 / 2e-44 GRAS family transcription factor (.1) Lus10040734 [exp] 170 / 1e-46 AT5G41920 410 / 1e-137 GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G175300 [exp] 559 / 0 AT4G08250 467 / 2e-161 GRAS family transcription factor (.1) Potri.002G086100 [exp] 559 / 0 AT4G08250 468 / 6e-162 GRAS family transcription factor (.1) Potri.012G020200 [exp] 183 / 2e-53 AT1G55580 415 / 8e-143 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.015G008300 [exp] 182 / 4e-53 AT1G55580 398 / 3e-136 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.001G326000 [exp] 181 / 6e-51 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.019G007100 [exp] 173 / 2e-49 AT4G08250 162 / 1e-44 GRAS family transcription factor (.1) Potri.001G473200 [exp] 166 / 1e-46 AT1G55580 405 / 4e-139 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.005G190300 [exp] 164 / 4e-46 AT4G08250 138 / 7e-36 GRAS family transcription factor (.1) Potri.016G143833 [exp] 166 / 4e-45 AT3G54220 679 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.006G114200 [exp] 165 / 1e-44 AT3G54220 639 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10028056 pacid=23181156 polypeptide=Lus10028056 locus=Lus10028056.g ID=Lus10028056.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCGGAGGCTCTCACCGGTCCGGCGAAGAGCAACGATCTCGCCCGTGTGATATTGGTTCGGCTCAAGGAATTGGTCTCCCCTAACCACGGAT CCAACATGGAGCGATTGGCGGCTCAGTTCGCCGACGCTTTGAACTTCTTGCTCGATGGTGGCGGTAATAAGCATTCGGCGAATGTTTATAACGGCGGAGG ATGCCGGGATGAGTACGGACAGGCGGATGTTTTGGCGGCGTTTCAGCTGCTTCAGGACATGTCGCCGTACGTGAAATTCGGGCATTTCACGGCGAATCAG GCGATCTTGGAGGCGGTGACTCACGACCGTCGGATCCACATCGTGGATTTCGATATCATGGAAGGGATCCAATGGGCCTCGCTTATGCAGTCCTTAGTGT CTAGAAAAGAAGGCCCACCTACCCCTCATCTACGAATCACGGCCCTGACACGTGGCGGCAGTAGCAGTGCCGCTAACCGGAGATCAATCGGAACTGTGCA GGAGACCGGCAGGCAATTGGTGGCATTCGCGGCCTCGATCGGCCAACCATTCTCCTTTCACCAATGCCGGCTCGACTCAGACGAGTCTTTCCGACCGTCT GCAGTCAAACTCGTCAGAGGAGAAGCATTGGTGATGAATTGTATGCTCCACTTACCGCATTTCACCTACCGATCACCCGAGTCAGTAGCCTCATTCCTAA ACGGGGCTCGATTGCTCAGCCCGAGATTGGTTACCCTAGCGGAAGAGGAACTAGGCCCCACTGAGGTAAACCACGCCGCTGGCAGTGGACATTTAGGTTC CCGCGACGGATGCTTGAGTCGGTTTATGGACACTCTACATCACTACTCGGCCGTGTACGATTCGTTAGAGGCGGGATTTCCGATGCAATGTCGAGCCAGG GCGCTAGTGGAGCGAGTGTTCCTAGGCCCGCAGATATCCGGATCGTTGGCTCGGATATATCGGGGCCGAGAGAAGGAAGTGGGCGGGTCGTGGTGGGAGT GGCTAACGGCGGCCGGGTTCCGGAGAGAAGGGGTGAGCTTTGCCAATCATTGTCAGGCTAAGCTACTTCTTGGACTTTTCAACGATGGGTACAGAGTGGA AGAAATGGGCTGTAACCGTTTGGTATTGGGCTGGAAGTCCAGGCGTTTACTCTCGACTTCCATTTGGACGACTCCGCCGTCCGTTTCTGATTCCGAATCA AGCTAA
AA sequence Show only first row Show all	>Lus10028056 pacid=23181156 polypeptide=Lus10028056 locus=Lus10028056.g ID=Lus10028056.BGIv1.0 annot-version=v1.0 MAAAEALTGPAKSNDLARVILVRLKELVSPNHGSNMERLAAQFADALNFLLDGGGNKHSANVYNGGGCRDEYGQADVLAAFQLLQDMSPYVKFGHFTANQ AILEAVTHDRRIHIVDFDIMEGIQWASLMQSLVSRKEGPPTPHLRITALTRGGSSSAANRRSIGTVQETGRQLVAFAASIGQPFSFHQCRLDSDESFRPS AVKLVRGEALVMNCMLHLPHFTYRSPESVASFLNGARLLSPRLVTLAEEELGPTEVNHAAGSGHLGSRDGCLSRFMDTLHHYSAVYDSLEAGFPMQCRAR ALVERVFLGPQISGSLARIYRGREKEVGGSWWEWLTAAGFRREGVSFANHCQAKLLLGLFNDGYRVEEMGCNRLVLGWKSRRLLSTSIWTTPPSVSDSES S

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08250	GRAS		GRAS family transcription fact...		Lus10028056 [exp]	0	1
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10029368 [exp]	1.4	0.9889
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033633 [exp]	3.6	0.9901
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021455 [exp]	4.9	0.9871
AT2G30770		CYP71A13	cytochrome P450, family 71, su...		Lus10019459 [exp]	8.4	0.9851
					Lus10024872 [exp]	9.2	0.9848
					Lus10014508 [exp]	10.6	0.9865
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10031580 [exp]	10.8	0.9654
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10024883 [exp]	11.8	0.9464
AT2G42360			RING/U-box superfamily protein...		Lus10005105 [exp]	12.2	0.9802
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10022936 [exp]	13.0	0.9654

Compare expression of checked genes

Lus10028056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.