Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12010 323 / 2e-92 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 296 / 3e-83 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G19510 283 / 1e-79 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G18360 278 / 7e-79 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 279 / 4e-78 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G11250 274 / 6e-76 Disease resistance protein (TIR-NBS-LRR class) (.1) AT4G11170 272 / 1e-75 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 268 / 4e-74 disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G69550 258 / 3e-70 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G46270 255 / 7e-70 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008221 [exp] 1095 / 0 AT4G12010 400 / 8e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10008320 [exp] 1019 / 0 AT4G12010 402 / 1e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10028060 [exp] 1017 / 0 AT4G12010 363 / 1e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10023051 [exp] 871 / 0 AT4G12010 415 / 2e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10008222 [exp] 808 / 0 AT4G12010 327 / 4e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015648 [exp] 681 / 0 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018021 [exp] 678 / 0 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10009107 [exp] 634 / 0 AT4G12010 347 / 4e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10019654 [exp] 619 / 0 AT4G12010 376 / 2e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068200 [exp] 382 / 2e-114 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 382 / 3e-113 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 363 / 6e-107 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 365 / 2e-106 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 355 / 7e-105 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 350 / 1e-101 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070300 [exp] 330 / 1e-97 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069600 [exp] 333 / 2e-95 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098900 [exp] 326 / 3e-94 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 328 / 2e-93 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10028058 pacid=23181109 polypeptide=Lus10028058 locus=Lus10028058.g ID=Lus10028058.BGIv1.0 annot-version=v1.0 ATGGCCTCTTCATCTTCCTCTGCTCCTTCACGGCCGTACAGTGGGAAATGGGAATACGACGTTTTCCTGTGTTTCAGAGGGGACACGAGGTACGATTTCA AGAGCCACCTTGAATCAGCTATGAAGGCTAAGAAAATCAGAGTCTTCGTTGACTCCATGCTTAAGGCAACGCAGGACATCGGCGAGCTGCTCGGAATCCT CGAAAGGACTGCGGTTTCGGTGGTGATTTTCTCGGGCAAGTTTGCCGATTCGCCCTGGTGCTTGGACGAGGTTTGCACCATCGTCGAAAGCATTAGGAAA TATGGACACAGGACACTTCCGGTATTTCACAAAGTGGATTGGACCACTGTTGCTGGTGACTACCATTGGTCCGATTGTTTGAAGTCGGCGTTCTGCTGCT CTTGCTTTCTCGATCGCCAGCCACTGTACGCTAAAACCATTGCTGGACTCGAAGCCACCAGAGAGCGTAAGAAGGAATGGATGAATTCTTTGCAAACAGT GGCATCAAAGACCGGTTGTACCTCTGAATCATCTCCGGACGACGGTAAATTAGTGGATGAGGTCGTGGCAAACGTCTTGACGACACTAACATCAATGTCG TCAGGCATAGAATTCAACAAATTGGTCGGCATGACTTCACGTCTCGCCAAGTTCGAGCAACTGTTAACCATGGACGCGGACCGCGACCAACCCAAAATCG TCCGCACGGTTGGACTCTGGGGGATGGGAGGTCTGGGCAAGTCAACTCTCGCCAGGACTTGCTACGAAAGACTGAAGAGACTCAACGACAGAGACGAAAT GAAATATCATTTCGTTGACAGAATCAACGAAACATCCTACTATAAAAAATCAAAATCCGTTGAAGAGCTAGTCCCGAAGCTCTATTCCACACTGCTATCG GAGAGCAACCTCACGCGGGAAGATCTTGACGATGATTACAGAAGGGAGCGTCTTTCTCGTTTAAAAGTGTTTCTAGTCCTGGACGATGTGCAAACTTCAA CCCAGTTAGAGTTGTTGGTTCTCGACAAGGCATTGAACCTCACGGAACTGTTTTCTCCCGGGAGCAGGATAATCATAACCACTCGAAATAGAAGAGTGTT GGAATACATAAACGCGGAGATTTATCCGTTCGAGCTGCATCTTACTGGCGACGAGCCACTTCAGCTCTTTAGACTGCACGCTTTCGTGCACAGCTCGAAT ATTCCACACGACTTTCTGGACCTGTCGAATAAATTTGTGTCGTGCTGTAAGGGGAACCCACTGGCGCTGAAAGTTTTGGGAGGTACATTGTTACGCAAGG ACATAGCGTATTGGAAGAGCTTCATCAGCTCGTTGAGCGAGATCCGAGAACCGGGGATTCACGATGTTTTGAGGCGAAGCTACGACGAGTTGGAAGAGGA TGACAAGGGGTTGTTCCTTGATGTAGCTTGTTTCTTTTACGGGACCTTGAAGTCTTTGCTGATACAATATATGGAGACTAGCTATCCCGGTTCGTACAGA AGAGTTGAGGATCTAATCGGGAAGTCCTTGCTGATTTGTAGTAATGACAAGATCCAAGGTGAGTTGATTGAGGTGCATAGTTTACTGAGGGAGATGGCTT GGAAAATCGTTAACGATGTTAAAAAAGTTGAAGAACGGAGCAGGTTGAAGGATCCTCACGACATCCACAACTTGTTGACCGTTGAAGAGGGGAAAAGAGC GACCCAAGGTATCCATTTAGACCTTTCGAAGGCCGAAGAGATGGTTCTGAAACCGAATACATTCAAAGGAATGGATGGTCTTAAATGGCTCGACTTCGAC TGGCCAGAAACCATTGGGTACCAGAACAAATTTCAAGTAGTGGATGGTGATCGCCTTAACTATCTTCCAAACGAGTTAAGGGGGTTTAATTGGGATCATT TCCCTTTTGAATCTCTGCCTTCGCGATTTTCACCCAAAAAACTGGTTTATCTTGTTATAAGGCATAGTCCCATTGACCAATGTTGGAAACAAGATCAGCC TAACCTCAAGAACCTGGTGTTACTCTGCCTCTCAAACTGTTCAAATCTAAAGGAAATCCCAAACTTGTTGAGCTGTTCAAATCTGGAGCACCTTCTCCTC CGCGAATGCAAATCCCTAATCGAGCTACCCGCAGACATCGAATCCCTCGAGAAGCTAGTCACTCTCGACGCCAGAAACTGCCTCAACTTACAAACCGCGC CGTCGAGCCTCAGCTCCAAATTCCTCAAGGAACTCCTACTATCCGGTTGCCCAAAGCTCACCTTTTGTCCGGAGGTAATCAATTCCGACGAATTGCAAGC TCTGGATCTAGACTTCACACCCGTCAGCCGCCTCCCGGATTCAGTCCACAAGGTCAAACATGGCGGCAATTTAACCCTCTACGGCCCTAACATCACCCAT TTCCCCCAAATTTCCAACCGCCTGGAGCTCCTCTGTCTCCGAGAAACCGCAATTACAGAAATCAAATTCGATCATCATCGCCAGAAATTCGATCGGTTGC ATTTGATGAAGAATGCGAAACTCACCGCTCTGCCGGGGGAGATATGGGATATGGTATCCGACGAACTCATCGTCGAGGATTCCCCACTGGTTAGCTACTT TCCGGTGATTTCTAACCCTGAATCGCACTCTTTGACTATGCTCCGCGTTAATGGCTGCGGATTGGTTACAGAGTTTCCGTCTTGCATATGCAAGCTGAAG CTGTTGGAAGTTCTGGTTTTCGTTGGGACGGGTATTAGGTCGGTTCCTTCTTGTATAAGGGAACTGGAGCGGCTCTCTTACTTGGATCTTTCGTACAATA CGAGCTTGGAGTCGATACCTAGCACGATCAATGAACTCGCCAAGTTGTCTAAGCCGAAACTAGTAGTAAAAGATGTTGATGTTGTTGTTAATGAGGAGAA TAATGGAATTATCCATCATGGTTCGTCAGTACAAGTACAACCGAGAAAGAAAGACGGGAAACGAAATTCACAAGGATTGAAGCTAGATCATTTCCCGCAG CTGATTGGAAACTCCCAGGTCCTTGCCAAACTCCCGCATCGAGGCTCGACTCGTCTCTCCAAGGTTGGTATTCACAGTTCAGGTAGCGATCAGAAAGTCA GAATGCAGCTCTGGGCTGACAAGTCTAGGAAGAGACCGCTAAACTTGAATGAAGATACTACTGGTGTGAAAAGACAATTGTGCTACGACGAAGATAGCGG GGAATTTAGGAGCCATAAAATTGGAGGGAGTCTATCTCGAGGTCGTGAATTCACCAGACCAACCCAGCGGTTCCATGCATATCGTAGGGTGTCAAACAGA AGCAGAGCGTCGAAAGTTGGTGCACAAGAAGATGCACACACAAATAATGACATTAAGATAGGCAGATATCCTTTTCTTGCTGGCATCAAGAAATGA
AA sequence Show only first row Show all	>Lus10028058 pacid=23181109 polypeptide=Lus10028058 locus=Lus10028058.g ID=Lus10028058.BGIv1.0 annot-version=v1.0 MASSSSSAPSRPYSGKWEYDVFLCFRGDTRYDFKSHLESAMKAKKIRVFVDSMLKATQDIGELLGILERTAVSVVIFSGKFADSPWCLDEVCTIVESIRK YGHRTLPVFHKVDWTTVAGDYHWSDCLKSAFCCSCFLDRQPLYAKTIAGLEATRERKKEWMNSLQTVASKTGCTSESSPDDGKLVDEVVANVLTTLTSMS SGIEFNKLVGMTSRLAKFEQLLTMDADRDQPKIVRTVGLWGMGGLGKSTLARTCYERLKRLNDRDEMKYHFVDRINETSYYKKSKSVEELVPKLYSTLLS ESNLTREDLDDDYRRERLSRLKVFLVLDDVQTSTQLELLVLDKALNLTELFSPGSRIIITTRNRRVLEYINAEIYPFELHLTGDEPLQLFRLHAFVHSSN IPHDFLDLSNKFVSCCKGNPLALKVLGGTLLRKDIAYWKSFISSLSEIREPGIHDVLRRSYDELEEDDKGLFLDVACFFYGTLKSLLIQYMETSYPGSYR RVEDLIGKSLLICSNDKIQGELIEVHSLLREMAWKIVNDVKKVEERSRLKDPHDIHNLLTVEEGKRATQGIHLDLSKAEEMVLKPNTFKGMDGLKWLDFD WPETIGYQNKFQVVDGDRLNYLPNELRGFNWDHFPFESLPSRFSPKKLVYLVIRHSPIDQCWKQDQPNLKNLVLLCLSNCSNLKEIPNLLSCSNLEHLLL RECKSLIELPADIESLEKLVTLDARNCLNLQTAPSSLSSKFLKELLLSGCPKLTFCPEVINSDELQALDLDFTPVSRLPDSVHKVKHGGNLTLYGPNITH FPQISNRLELLCLRETAITEIKFDHHRQKFDRLHLMKNAKLTALPGEIWDMVSDELIVEDSPLVSYFPVISNPESHSLTMLRVNGCGLVTEFPSCICKLK LLEVLVFVGTGIRSVPSCIRELERLSYLDLSYNTSLESIPSTINELAKLSKPKLVVKDVDVVVNEENNGIIHHGSSVQVQPRKKDGKRNSQGLKLDHFPQ LIGNSQVLAKLPHRGSTRLSKVGIHSSGSDQKVRMQLWADKSRKRPLNLNEDTTGVKRQLCYDEDSGEFRSHKIGGSLSRGREFTRPTQRFHAYRRVSNR SRASKVGAQEDAHTNNDIKIGRYPFLAGIKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12010			Disease resistance protein (TI...		Lus10028058 [exp]	0	1
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Lus10008097 [exp]	2.2	0.9426
					Lus10041915 [exp]	4.6	0.9326
AT5G60700			glycosyltransferase family pro...		Lus10041317 [exp]	4.7	0.9350
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10021478 [exp]	12.4	0.9181
AT2G03760		AtSOT12, AtSOT1...	ARABIDOPSIS THALIANA SULFOTRAN...		Lus10031623 [exp]	14.3	0.9191
AT5G15640			Mitochondrial substrate carrie...		Lus10035134 [exp]	14.8	0.8944
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10041055 [exp]	15.0	0.9212
AT1G12640			MBOAT (membrane bound O-acyl t...		Lus10029595 [exp]	17.3	0.8935
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10007007 [exp]	18.7	0.9246
AT1G55210			Disease resistance-responsive ...		Lus10017228 [exp]	20.0	0.9149

Compare expression of checked genes

Lus10028058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.