Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12010 352 / 1e-102 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 345 / 8e-100 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G11170 327 / 1e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 320 / 1e-93 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 317 / 6e-92 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G51630 315 / 8e-90 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT4G16890 311 / 4e-88 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT2G14080 301 / 5e-85 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G11250 296 / 2e-83 Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G41540 293 / 4e-83 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008320 [exp] 1652 / 0 AT4G12010 402 / 1e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10008221 [exp] 1110 / 0 AT4G12010 400 / 8e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10028058 [exp] 1082 / 0 AT4G12010 367 / 3e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10023051 [exp] 888 / 0 AT4G12010 415 / 2e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10008222 [exp] 874 / 0 AT4G12010 327 / 4e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015648 [exp] 706 / 0 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018021 [exp] 706 / 0 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10009107 [exp] 641 / 0 AT4G12010 347 / 4e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10019654 [exp] 636 / 0 AT4G12010 376 / 2e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068200 [exp] 458 / 3e-142 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 428 / 5e-130 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 423 / 7e-129 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 417 / 1e-125 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 411 / 6e-125 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 404 / 5e-120 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098900 [exp] 390 / 5e-117 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097800 [exp] 379 / 2e-112 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098500 [exp] 365 / 8e-110 AT5G17680 496 / 4e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 370 / 2e-109 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10028060 pacid=23181205 polypeptide=Lus10028060 locus=Lus10028060.g ID=Lus10028060.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCATCTACTACCCCTCCGTATACAGGGCAATGGCAACACGAAGTTTTCCTATGCTTCAGAGGTGACGACGTGAGGAACAATTTCCTGAGCC ACCTTGAAGGAGCTATGAAGTCCCAGAAAATCGACTGCTTCGTCGACACCAAGCTCGAGGCAGTGCAGGACATCAAGGAGCTGCTCCGAATCCTCGAAAG GACCGCGGTTTCGGTGGTGATTTTTTCAGGCAAGTTTGCTGATTCGTCATGGTGCTTGGACGAGGTTTCCACCATAGCTGGAAGCATTGAGAAATACAGA CACAGGGCGATTCCGGTGTTCTACAACGTGGATTGGGACACGGTGGTTGGCGACTACCATTGGTTCGATGATTGGAAAGCAACCTGCTTCTCTTGCTTTC TCTCTTGCTTTCTCCCTCAGCCCATACCACAGCCCATGTCGTACGCTAAAACTATCGCTGGACTGGAGGCCACCCAAGAGCGGAAGAAGGAATGGATAGA TTTTTTGCAGGCAGTAGCTTCCAAGACTGGCTGTACCTCTGAATCATTTCCGGTGGATAATGATTTAGTTGGGAAGGTTGTGGCAGACGTTCTTGCAACA CTAACATCCATGTCGCCAAGCACCGAGTTTAAAAATCTGCTTGGTATGGATACTCGTGTTTCGAAGGTTGAGGAATTGTTAGCCATGCACGATTCCGACA CCAGTTTCATTGTCGGACTTTGGGGAGAGGGAGGCCTTGGTAAATCGACCCTAGCTAGAGCATGCTACGAAAAATTGAGGAAACCCAACGAAAAGAAGAT GAAGTTTCATTTCGTTGAGAAAATCAACCAAACTTGCAATAAATCAAGCCTCGTTACGAGACTAGTACATGATTTCTACTCAGCATTGTTGAATGGCGAG ACTCTTCAGAATGGAGTTGACATTAGAGTAGCAGAACGTCTTCTGCGTTCAAAAGTCTTTGTTGTTCTTGACGATGTGCAGAGTATTCCGCAGCTAGATG AGTTTCTGTTAGGAAAGGCCATGAAACTCGGGGAACTCTTTGCTCCCGGGAGCAGAATTATTATAACTACTAGGAATCGAGCGGTGCTGAAATACGCCAA GGAGATGCACAGAGTTACTCATCTTAATGACAAAGAGTCTCTTCGACTCTTTAACTTACGTGCTTTTGAAGACCCGGGTCACATTCGAGATGCTGAACAG GTGAATCTGTCACGTGAAGTTGTGACATACTGTCAGGGGAACCCGCTGGCCCTGAAAGTAATAGGAGATACACTGTTACACAACGACGTAGCGTACTGGA AGAGTTTTTTGGGCAAATTAAAAACGATTCAAGACCGAGAAATTCATTCTGTTCTGAGACGAAGTTACGACGAGTTGGGAAATGATGACAAGAAGTTGTT CCTGGATATTGCCTGCTTCTTTGATGGGACTCCGAGGTCCTTGTTGGTGAAGTATATGGATTCTAGTTACATCTCTTCATATCACAGAATTGAGGATCTG ATCCAGAAGTCTCTACTAATGACTACTGATGACAAGATCCAAAGGGTGAAAGTTTCGGTGCATAGTTTACTGAGAGAAATGGCTTGGAACATCGTCAATG AGGAAGAAATTATTGGAAACCGCAGTAGACTGAACAATCATGATGACATTAGCAGCTTGTTGAGTCAAGATGGAATAAGAGCAACCCAAGGGATATGCTT GGACCTTTCCAAAGCTGATGTGTTTCTGAAAGCTGATGCCTTCAAAGGGATGGACTCTCTTAGATGGCTCGACTTTGGCTGGCCTAATTCTGTTGATTAC GTGAACCGCAAAATCCAACTATCGAATGGTGACCTTAACTACCTGCCAAATGAGTTAAGGGGCTTCAACTGGGATCACTTCCCTTGCCATTCTCTGCCGT CAGGATTTTCTCCTAGAAAACTTGTTTACCTTGTCATAATGCATAGTCCGATTCGGGTCTGTTGGGAGCGAAACCAGCCTAAGCTTGAGCACCTGATGCT GCTCTGCCTCTCCGACTGTGGGAATCTGGCTACTGTCCCGAACCTGTGGTTCTGTTCAAATCTCGAACACATTCTACTCCGCAGATGCAAGACCTTAGTT GAGTTACCCGCAAGCATCGAATTACTTGAGAAGTTAGTAACGTTGGACGCGAGAGATTGTCAAAAACTGGAGTGCGTACCATCTAGGCTCAAGTCCAAGT TCCTTAAACAACTCTTACTCTCCAACTGTCCGAAACTCACCGGCTGTCCCAAGGTCAAATCTCTAGAATTGCAGGCTCTCGATTTAGACTGGACGCCCAT CAAATCCCTCCCCGATTCTATCTACAAGGTTAAGCAAGATGGCGTAGTAAGCCTCTACGGCCCAAACATCACGCATTTCCCGCAAGTTCGTACCGGATTA TCACTCCTCCTTCTGCGCAATACCGCAATCCAAGAAATCAAAATTGAGCTTCAGCTGAAGTTCGACCGGTTGCATTTAATCCAGAACGCCCAGCTCACCA CTCTGCCGGCGGAGATCTGGGATATGGTCTCCAACGAATTGTTTATTGAGGATTGTCCACTGATCGAATGTTTACCGGTGATATCAGAGCCTCGTTCTTA CAGTTTAACAAAGCTCCACGTTGCTGGCTGCCTAAAGATCACCGAGTTCCCAGTTTGCATATGCAAACTCAAGTGCTTGGAGGTTCTGGTTTTTGTTGGC ACGGATATCGAGTCTCTGCCGATAGGTATTGGGGAGCTGAAGCAGCTGTCGTATTTAGACCTCTCGTACAGTACCAGACTGGAATTGATACCTGGTACCA TCAGCGAACTCGGGAAGCTGTCCGAGCTAGTGTTGATTGGGTGTGGGAGTAGTCTGTCTTTGCCAGAACTACTCCCACCCAATCTTAACGTTGTGAAGGA GAAAAAATATCAAAGGACGTCCACAATACAAGCATTGTTGAGAACCGTCATTGCGGATAGGAAATCATACAACTTTATGCTTGATATCCGCTCAGCACTG ATTGGAAGTTCGGTTGCGATTGCCGAACTTCCACTACCAAACATTTCGGCATTGATTTTTTTTCATATTTGTAAACTATTTGGGTCTTCGTTGCAGGCCG GTGCCTCTTCATTTCGTCATCGTCGTGGAAGCGTAACAACGAAGGACTGGGTAGCGAAGCCTGTGCAACAAGAGCTGCGGGCCGATGAAGTTACTAGCGG ACCAATGCGTAGGAAACACCGAGGAAGTCTGAATCAGAAACAGGATCTTGTCTTTACCGGACCCATCCAACAGCTTGATGCTTACGATAATCCGTTGCCT GATCACCGCAACGGTGTCGTACTCCAACCTGTGGAATCTCTAATTTCTTCCCTGAATTCACAAATTTTCAACCAGGTACTAAAAAGAACTCTCAAGCGGG CGTCGGTCTTGAAAAAGATGCCGATACTGAAGGGCCCTAAGTAA
AA sequence Show only first row Show all	>Lus10028060 pacid=23181205 polypeptide=Lus10028060 locus=Lus10028060.g ID=Lus10028060.BGIv1.0 annot-version=v1.0 MASSSTTPPYTGQWQHEVFLCFRGDDVRNNFLSHLEGAMKSQKIDCFVDTKLEAVQDIKELLRILERTAVSVVIFSGKFADSSWCLDEVSTIAGSIEKYR HRAIPVFYNVDWDTVVGDYHWFDDWKATCFSCFLSCFLPQPIPQPMSYAKTIAGLEATQERKKEWIDFLQAVASKTGCTSESFPVDNDLVGKVVADVLAT LTSMSPSTEFKNLLGMDTRVSKVEELLAMHDSDTSFIVGLWGEGGLGKSTLARACYEKLRKPNEKKMKFHFVEKINQTCNKSSLVTRLVHDFYSALLNGE TLQNGVDIRVAERLLRSKVFVVLDDVQSIPQLDEFLLGKAMKLGELFAPGSRIIITTRNRAVLKYAKEMHRVTHLNDKESLRLFNLRAFEDPGHIRDAEQ VNLSREVVTYCQGNPLALKVIGDTLLHNDVAYWKSFLGKLKTIQDREIHSVLRRSYDELGNDDKKLFLDIACFFDGTPRSLLVKYMDSSYISSYHRIEDL IQKSLLMTTDDKIQRVKVSVHSLLREMAWNIVNEEEIIGNRSRLNNHDDISSLLSQDGIRATQGICLDLSKADVFLKADAFKGMDSLRWLDFGWPNSVDY VNRKIQLSNGDLNYLPNELRGFNWDHFPCHSLPSGFSPRKLVYLVIMHSPIRVCWERNQPKLEHLMLLCLSDCGNLATVPNLWFCSNLEHILLRRCKTLV ELPASIELLEKLVTLDARDCQKLECVPSRLKSKFLKQLLLSNCPKLTGCPKVKSLELQALDLDWTPIKSLPDSIYKVKQDGVVSLYGPNITHFPQVRTGL SLLLLRNTAIQEIKIELQLKFDRLHLIQNAQLTTLPAEIWDMVSNELFIEDCPLIECLPVISEPRSYSLTKLHVAGCLKITEFPVCICKLKCLEVLVFVG TDIESLPIGIGELKQLSYLDLSYSTRLELIPGTISELGKLSELVLIGCGSSLSLPELLPPNLNVVKEKKYQRTSTIQALLRTVIADRKSYNFMLDIRSAL IGSSVAIAELPLPNISALIFFHICKLFGSSLQAGASSFRHRRGSVTTKDWVAKPVQQELRADEVTSGPMRRKHRGSLNQKQDLVFTGPIQQLDAYDNPLP DHRNGVVLQPVESLISSLNSQIFNQVLKRTLKRASVLKKMPILKGPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12010			Disease resistance protein (TI...		Lus10028060 [exp]	0	1
AT4G12010			Disease resistance protein (TI...		Lus10004075 [exp]	3.5	0.9149
AT3G18180			Glycosyltransferase family 61 ...		Lus10036003 [exp]	5.6	0.9253
AT1G02460			Pectin lyase-like superfamily ...		Lus10009994 [exp]	7.2	0.9176
AT3G56230			BTB/POZ domain-containing prot...		Lus10010216 [exp]	7.2	0.9220
AT1G73340			Cytochrome P450 superfamily pr...		Lus10031295 [exp]	7.5	0.8663
AT4G05160			AMP-dependent synthetase and l...		Lus10026544 [exp]	10.1	0.8730
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10029585 [exp]	10.8	0.9216
AT2G21100			Disease resistance-responsive ...		Lus10034478 [exp]	12.4	0.9158
AT1G05030			Major facilitator superfamily ...		Lus10030010 [exp]	13.5	0.9026
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010045 [exp]	13.7	0.9139

Compare expression of checked genes

Lus10028060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.