Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58400 149 / 2e-37 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59780 146 / 2e-36 NB-ARC domain-containing disease resistance protein (.1) AT3G07040 144 / 2e-35 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT5G35450 137 / 1e-33 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 126 / 5e-30 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59620 116 / 9e-27 CW9 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G48620 114 / 4e-26 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58390 114 / 5e-26 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G53350 113 / 7e-26 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58807 111 / 5e-25 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028076 [exp] 873 / 0 AT1G58848 147 / 6e-37 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) Lus10025626 [exp] 625 / 0 AT3G46530 87 / 5e-18 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) Lus10025625 [exp] 474 / 4e-165 AT5G43470 101 / 6e-24 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) Lus10027281 [exp] 193 / 9e-52 AT3G07040 459 / 5e-147 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10038983 [exp] 190 / 9e-51 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 177 / 2e-46 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 161 / 3e-41 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 158 / 5e-40 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 155 / 5e-39 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G083700 [exp] 475 / 4e-163 AT1G58400 108 / 4e-25 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.008G187700 [exp] 286 / 7e-89 AT3G07040 0 / 1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.010G044601 [exp] 275 / 2e-85 AT1G58400 112 / 2e-26 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.001G134500 [exp] 219 / 5e-61 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134475 [exp] 211 / 5e-58 AT3G07040 413 / 1e-129 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134400 [exp] 209 / 2e-57 AT3G07040 427 / 3e-134 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134701 [exp] 202 / 5e-55 AT3G07040 464 / 6e-149 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134450 [exp] 201 / 1e-54 AT3G07040 488 / 1e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134601 [exp] 199 / 3e-54 AT3G07040 443 / 2e-142 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134300 [exp] 199 / 4e-54 AT3G07040 487 / 2e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10028075 pacid=23181220 polypeptide=Lus10028075 locus=Lus10028075.g ID=Lus10028075.BGIv1.0 annot-version=v1.0 ATGGCAGAAGCTCAGGTTAAATTCTTCTTACAAAGATTGGGGTCACTGTTAGTTCAGAGAGCTGACCTTTTTCGAGGTGGAGTCCAAGATCAACTTGGAA GGATCCAAAGTACAGTCCAGGAGATTGGTGGATTCCTGGGAGACAGGGGAAGTAGTTCCGAGAGTGAAGATGGGATCGGTGGCTGGATGAGCGAAGTTCA AGACTTGTGCTTCGAAATGGACGATCTTGTTGACGAATTCATCATTCAGATGCATCAGCAAGATGACCACGAGCTTTTGACGGAGTCATTCAAGTGTGAG CTACAGAAGACAGAATCTCGTTTGGAAGAGTTGGTCAACAGAAAGCATGAGCCAAGTCATCCACCTGAAAATGAGACGCAGAGGCAGGAAGCTGGAAAAG AAGCATACCAGGAAACCGTCGAGGCTCAAACTCACAAGGAAGATCAGACCTCCGCTGCAACTTCGGATGAATCCAGGTTGATGTATACTAGCTTGCCTTA TTACCTTCAATCTTGCTTGTTGTATTGCTGCATATTTCCCGAGGGTTACTGGGTTTCCAAGGGGAAGTTGATCCGGTTGCTAGTAGCTGAAAGTCTGGTT CAGGAAGGGACTGGAAGATTGCCAGAGGAATTAGCTGAAGAAAACATCGATGAACTGATCACTCGAGAGATGATCTGCAAGAAGAATGAACACCCAGGTC ACGGAACAAACATCACTGTTGTATCTTCTTATAGAGCAATCGTCCGCGAGCGAGTTGTTTCCACCCATCCTGCTCCATATTCAAACATTCCCAGCAGAGC ACGTCGCGTTTTGACTCCAGACATGACAAATATTGCAGAGACGCTGAAAGATACTAGGCCGCGGACATTGTTCTCGTTCGGGAAACAGAATCATTTGGAA GGGAACTGGCTGAGTTTCCCGGGAGCAAAGTTTCTCAGGGTGCTAGATCTTGAGGGAGGTAAGATCAAGAGCATACCTGATGAATTGGGAGACCTGATTC ATTTGACTTATCTGGGCTTGAAATACAATGATATCACTGATCTTCCGGTGACAATAGGCAACTTAAATGCTTTGGAGACGCTGGACATCAGATGGTGCGG GAGATTGACATCACTGTCAGGTGAGATACTAAATCTGATTAGACTAAGGCACATCAAAATGTTCAAGAACATGGATGTCAAAGGGATGAAGCTGCCAGAA GGGATATCTCGATTCACAGACCTCCTTACCCTCACTGGTGTGCATGGTGGTGGTTACTTTCCCACAGAATTGAGCAAACTGAGAAAGCTCAGGAGGTTGG GAGTGATGGATGTTACTGAAGACATCGCAGATCAACTATTTGCGTCAATTATGAGGCTGCAAAGTCTTATTAGCTTGTCTCTACAGTCAAAATCTCATGC TGGTAAGGAAACGCTCACACTCCCGGAGTCATTTTCACCTCCACCGCTGCTTCAAAAACTTCGCCTAGAAGGTCGCCTTGAGAAGCTCCCAAACTGGTTT CACTGCTTGAACAATCTGATAAAGCTAAGACTGGGATTCTCTCATCTAGAAGAGGACCCGGGATTGGTGCTCCAGCTCCTACCTAATTTACAGAATCTCA CGCTGTGGCAAGCTTATGATGGAAAACAGTTGGGGAAAGAATTCTGCGAGGTCGGTGGGTTCCCGAAATTGGAGGTTCTCAGCATTGCTTCACATGCACT TGAAGAATGGACAGAGGTGGAAGAGGGAGCATTCCCAAGCTTACAATACTTGCATATCCATAACTGTTCGCGACTAAGGATGCTCCCAGAAGGCTTGCAG TTTGTAACCACTCTAAAACAGTTGGATTTGCTGCCGCTCCGTGATGAACTTGTTGAGAGACTGAAACCTGATGGCGGAGAGGAGAATTACAAGATCAAGC ACATTCCAAACATAAGGTTCCTCCCAGTGTCTGCACTCAATTTCACGCCCCCCAACCAATCTGCAAATGAAGGAACACCAGCATAA
AA sequence Show only first row Show all	>Lus10028075 pacid=23181220 polypeptide=Lus10028075 locus=Lus10028075.g ID=Lus10028075.BGIv1.0 annot-version=v1.0 MAEAQVKFFLQRLGSLLVQRADLFRGGVQDQLGRIQSTVQEIGGFLGDRGSSSESEDGIGGWMSEVQDLCFEMDDLVDEFIIQMHQQDDHELLTESFKCE LQKTESRLEELVNRKHEPSHPPENETQRQEAGKEAYQETVEAQTHKEDQTSAATSDESRLMYTSLPYYLQSCLLYCCIFPEGYWVSKGKLIRLLVAESLV QEGTGRLPEELAEENIDELITREMICKKNEHPGHGTNITVVSSYRAIVRERVVSTHPAPYSNIPSRARRVLTPDMTNIAETLKDTRPRTLFSFGKQNHLE GNWLSFPGAKFLRVLDLEGGKIKSIPDELGDLIHLTYLGLKYNDITDLPVTIGNLNALETLDIRWCGRLTSLSGEILNLIRLRHIKMFKNMDVKGMKLPE GISRFTDLLTLTGVHGGGYFPTELSKLRKLRRLGVMDVTEDIADQLFASIMRLQSLISLSLQSKSHAGKETLTLPESFSPPPLLQKLRLEGRLEKLPNWF HCLNNLIKLRLGFSHLEEDPGLVLQLLPNLQNLTLWQAYDGKQLGKEFCEVGGFPKLEVLSIASHALEEWTEVEEGAFPSLQYLHIHNCSRLRMLPEGLQ FVTTLKQLDLLPLRDELVERLKPDGGEENYKIKHIPNIRFLPVSALNFTPPNQSANEGTPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10028075 [exp]	0	1
AT4G29010		AIM1	ABNORMAL INFLORESCENCE MERISTE...		Lus10011102 [exp]	3.5	0.8528
AT2G16900			Arabidopsis phospholipase-like...		Lus10012164 [exp]	4.0	0.8271
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10023672 [exp]	7.9	0.8623
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10018589 [exp]	8.3	0.8050
AT5G15080			Protein kinase superfamily pro...		Lus10005255 [exp]	8.6	0.8571
AT3G53030		SRPK4	ser/arg-rich protein kinase 4 ...		Lus10005364 [exp]	10.0	0.8091
AT5G10530			Concanavalin A-like lectin pro...		Lus10029553 [exp]	14.1	0.8174
AT1G14780			MAC/Perforin domain-containing...		Lus10041285 [exp]	17.5	0.8316
AT4G36195			Serine carboxypeptidase S28 fa...		Lus10028365 [exp]	18.1	0.8473
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10005419 [exp]	19.9	0.7942

Compare expression of checked genes

Lus10028075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.