Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07040 132 / 4e-32 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G58400 129 / 6e-31 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59780 120 / 3e-28 NB-ARC domain-containing disease resistance protein (.1) AT5G35450 118 / 2e-27 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G48620 105 / 2e-23 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G53350 105 / 2e-23 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 105 / 3e-23 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G50180 103 / 5e-23 NB-ARC domain-containing disease resistance protein (.1) AT1G59620 102 / 2e-22 CW9 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58410 92 / 3e-19 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028075 [exp] 884 / 0 AT3G07040 168 / 1e-43 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10025626 [exp] 560 / 0 AT3G46530 87 / 5e-18 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) Lus10025625 [exp] 351 / 6e-118 AT5G43470 101 / 6e-24 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) Lus10038983 [exp] 162 / 8e-42 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10027281 [exp] 161 / 2e-41 AT3G07040 459 / 5e-147 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 135 / 5e-33 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 132 / 5e-32 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 125 / 1e-29 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 124 / 4e-29 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G083700 [exp] 379 / 4e-126 AT1G58400 108 / 4e-25 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.010G044601 [exp] 218 / 2e-64 AT1G58400 112 / 2e-26 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.008G187700 [exp] 218 / 2e-63 AT3G07040 0 / 1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099100 [exp] 180 / 9e-48 AT3G07040 482 / 8e-156 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134500 [exp] 167 / 2e-43 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134475 [exp] 165 / 6e-43 AT3G07040 413 / 1e-129 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134400 [exp] 165 / 9e-43 AT3G07040 427 / 3e-134 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G098900 [exp] 160 / 3e-42 AT3G07040 290 / 1e-87 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134450 [exp] 159 / 9e-41 AT3G07040 488 / 1e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134701 [exp] 157 / 3e-40 AT3G07040 464 / 6e-149 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10028076 pacid=23181112 polypeptide=Lus10028076 locus=Lus10028076.g ID=Lus10028076.BGIv1.0 annot-version=v1.0 ATGACAGAAGCACAGGTTAAGTTCTTCTCACAGAGATTGGGATCATTACTAGTTCAGGAAGCTGACCTTTTTCGAGGTGGAGTCCAAGATCAAATCGGAA GGATCCGAAGCACACTCAACGAGATTGGTGGACTCCTGGGAGAGAAGGGTAGTAGTTCCGAGATCGGTGGCTGGTCGAGCCAAGTTCAAGACCTGTGCTT TGAAATGGATGATCTTGTCGACGAATTCATCATTCAGATGCATCAGCAAGATGATCACGAACTTCTGACCGAGTCGTTCAAGTGTGAGCTACAAAAGACA GAATCTCGCTTGGATGAGATGGTCAACAGAAAGCATGAGCCAAGTCAACCATCACGAAATGAGACACAAGCTGCGAAAGAACCATACCAGGGAACCGTCG AGGATGAAACCTTGGATGAATCCAGGTTAATCTATGCTAGCTTGCCTTATTACCTTCAATCTTGCTTGTTATATTGCTGCATATTCCCCGAGGGTTACTG GATCGCGAAGGGGAAGTTGATCCGGTTGCTAGTAGCAGAAGGTCTGGTCCAGGAACTGGCTGGAAGATTACCGGAGGAATTAGCTGCAGAGAATATCAAC GAACTGATCATTCGGGAGATGATCTACAAGAAGAATGAACATCCAGGTCACGGAACAAGCATCACTGTTGCCTCTCCTTATCGAGCAATCGTTCACGAAC GAAATGTATCTTCCCATCCTGCACCATATTCAACCATCCCCATCAGAGCCCGCCGGGTTTTAGCCTCTGGCATGAGAAATATTGCAGAGACGCTGAAAGA TATTAGGCCGAGGACATTGTTCTTGTTCGGGAAACAGGATCGTTTGGAAGGGAACTGGTTGAGCTTCCCAGGAGCAAAGTTTCTCCGGGTGTTAGATCTT GAAGGAGCTAAGACCAAGAGCATACCTGATGAATTGGGAGACCTGATTCATTTGACTTATCTGGGCTTGAAACACAATGATATCACTGATCTTCCGGTGA CAATCGGCAGCTTAAATGCTTTGGAGACATTGGACATCAGCTGCTGCGGGAGATTGACATCACAACTGAGAAAGCTCAGGAGGTTGGGAGTGATGGATGT TACTGAAGACATAGCAGATCAACTATTTGCATCAATTATGACGTTGAAGAGTCTCATTAGCTTGTCGCTACATGCTAACTCGCCTGCTCGAAAGGGAAAG CTCACACTCGTGGAGTCATTTTCACCTCCACCGCTTCTGCAAAAGCTTCGCCTACATGGTCGACTGGAAAAGATTCCAACTTGGTTTCAAAATTTGAACA ATCTGAAAATGCTGAGATTGGGTTTATCTCATCTAGAAGAGGACCCGGGATTGGTGCTCCAGCTCCTGCCTAATCTGCAGAATCTCACTCTGTGGCATGC TTATGGTGGAAAACAGTTGGGGAAGGAATTCTGCAAGGCTGGTGGATTTCCGAAACTGGAGGTTTTCATCATTGCTTCCCATGTTCTTGAAGAATGGACA GAGGTGGAAGAGGGAGCATTCCCAAGCTTACAATCCCTACATATCCGCAACTGTTCGCAACTGAGGGTGCTCCCAGAAGGCTTGCAATTTGTCACCACTC TAAAACAGTTGGATTTGCTGCCGCTGCATGATGAACTTGTTGAGAGACTGAAACCTGATGGTGGGGAAGAGAACTACAAGATCAAGCACATTCCAAACGT ACAGTTCATCCCAGTGTCTGCACTGAATTTCACTCCCCTCAACCAATCTGCAAACGAACAAAGAACACCAGCACAAATATCTATGTTAGGTGGAACTAAG AACTAA
AA sequence Show only first row Show all	>Lus10028076 pacid=23181112 polypeptide=Lus10028076 locus=Lus10028076.g ID=Lus10028076.BGIv1.0 annot-version=v1.0 MTEAQVKFFSQRLGSLLVQEADLFRGGVQDQIGRIRSTLNEIGGLLGEKGSSSEIGGWSSQVQDLCFEMDDLVDEFIIQMHQQDDHELLTESFKCELQKT ESRLDEMVNRKHEPSQPSRNETQAAKEPYQGTVEDETLDESRLIYASLPYYLQSCLLYCCIFPEGYWIAKGKLIRLLVAEGLVQELAGRLPEELAAENIN ELIIREMIYKKNEHPGHGTSITVASPYRAIVHERNVSSHPAPYSTIPIRARRVLASGMRNIAETLKDIRPRTLFLFGKQDRLEGNWLSFPGAKFLRVLDL EGAKTKSIPDELGDLIHLTYLGLKHNDITDLPVTIGSLNALETLDISCCGRLTSQLRKLRRLGVMDVTEDIADQLFASIMTLKSLISLSLHANSPARKGK LTLVESFSPPPLLQKLRLHGRLEKIPTWFQNLNNLKMLRLGLSHLEEDPGLVLQLLPNLQNLTLWHAYGGKQLGKEFCKAGGFPKLEVFIIASHVLEEWT EVEEGAFPSLQSLHIRNCSQLRVLPEGLQFVTTLKQLDLLPLHDELVERLKPDGGEENYKIKHIPNVQFIPVSALNFTPLNQSANEQRTPAQISMLGGTK N

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58848			Disease resistance protein (CC...		Lus10028076 [exp]	0	1
					Lus10007992 [exp]	1.7	0.8892
AT3G07310			Protein of unknown function (D...		Lus10038208 [exp]	2.8	0.8757
AT4G17250			unknown protein		Lus10000731 [exp]	3.5	0.8648
AT3G53810			Concanavalin A-like lectin pro...		Lus10040773 [exp]	3.6	0.8224
AT3G47640	bHLH	PYE, bHLH047, P...	POPEYE, basic helix-loop-helix...		Lus10042194 [exp]	5.3	0.8144
AT5G65660			hydroxyproline-rich glycoprote...		Lus10032818 [exp]	5.5	0.8323
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Lus10012333 [exp]	10.2	0.8711
AT5G49650		XK2, XK-2	XYLULOSE KINASE 2, xylulose ki...		Lus10007234 [exp]	10.5	0.8722
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Lus10006379 [exp]	10.6	0.8610
AT5G49650		XK2, XK-2	XYLULOSE KINASE 2, xylulose ki...		Lus10028235 [exp]	10.7	0.8675

Compare expression of checked genes

Lus10028076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.