Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77690 813 / 0 LAX3 like AUX1 3 (.1) AT2G21050 768 / 0 LAX2 like AUXIN RESISTANT 2 (.1) AT2G38120 725 / 0 MAP1, WAV5, PIR1, AUX1 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) AT5G01240 711 / 0 LAX1 like AUXIN RESISTANT 1 (.1.2) AT5G41800 57 / 2e-08 Transmembrane amino acid transporter family protein (.1) AT1G08230 57 / 2e-08 ATGAT1 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) AT5G02170 49 / 5e-06 Transmembrane amino acid transporter family protein (.1.2) AT5G02180 49 / 7e-06 Transmembrane amino acid transporter family protein (.1) AT2G41190 48 / 1e-05 Transmembrane amino acid transporter family protein (.1) AT5G40780 44 / 0.0002 LHT1, LTH1 lysine histidine transporter 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025628 [exp] 931 / 0 AT1G77690 808 / 0.0 like AUX1 3 (.1) Lus10025057 [exp] 788 / 0 AT2G21050 866 / 0.0 like AUXIN RESISTANT 2 (.1) Lus10034488 [exp] 787 / 0 AT2G21050 864 / 0.0 like AUXIN RESISTANT 2 (.1) Lus10028278 [exp] 734 / 0 AT2G38120 801 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10040212 [exp] 730 / 0 AT2G38120 798 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10004831 [exp] 718 / 0 AT2G38120 853 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10002498 [exp] 709 / 0 AT2G38120 842 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10039190 [exp] 59 / 4e-09 AT2G39130 652 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10038639 [exp] 57 / 2e-08 AT1G08230 523 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G087000 [exp] 801 / 0 AT1G77690 745 / 0.0 like AUX1 3 (.1) Potri.005G174000 [exp] 793 / 0 AT1G77690 776 / 0.0 like AUX1 3 (.1) Potri.009G132100 [exp] 782 / 0 AT2G21050 832 / 0.0 like AUXIN RESISTANT 2 (.1) Potri.004G172800 [exp] 769 / 0 AT2G21050 829 / 0.0 like AUXIN RESISTANT 2 (.1) Potri.008G066400 [exp] 711 / 0 AT2G38120 746 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.006G098300 [exp] 711 / 0 AT2G38120 795 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.016G113600 [exp] 709 / 0 AT2G38120 796 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.010G191000 [exp] 709 / 0 AT2G38120 734 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.009G149900 [exp] 76 / 2e-14 AT1G08230 573 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.008G026600 [exp] 69 / 2e-12 AT1G08230 509 / 2e-179 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10028078 pacid=23181186 polypeptide=Lus10028078 locus=Lus10028078.g ID=Lus10028078.BGIv1.0 annot-version=v1.0 ATGGCTTCAGAGAAAGTGGAGACAGTGGTTGCAGGGAACTACCTGGAAATGGAGAGTGCATCAGCAACAGAAACAGATCATGGAGATGGAAGCTCTAAAG AACTCTCCACTAAGTCCAAGTTCTCTACTTTCTTCTGGCATGGTGGCTCTGCCTATGATGCCTGGTTCAGCTGTGCTTCTAACCAGGTGGCACAAGTGTT GCTGACACTGCCATACTCATTCTCACAACTAGGGATGTTATCAGGGATCCTCTTCCAGATCTTCTATGGCTTGATGGGAAGCTGGACAGCATACCTTATT AGTATTCTCTATGTTGAGTACAGAACCAGGAAGGAAAGAGAAAAAGTTGATTTCAGAAACCATGTCATTCAGTGGTTTGAAGTTCTTGATGGGTTGCTAG GGAAGCATTGGAGGAACTTAGGACTCATTTTCAACTGTACTTTTCTGCTGTTTGGATCTGTCATTCAGCTAATTGCGTGTGCAAGCAACATCTACTACAT AAATGACAATCTAGACAAGAGAACATGGACCTACATCTTTGGAGCATGTTGTGCAACAACTGTGTTCATCCCTTCTTTCCACAACTACAGAATTTGGTCC TTTTTAGGCCTCATCATGACCACTTACACTGCTTGGTATCTCACTATTGCTTCAATTACTCATGGCCAGGCTGAGGGAGTGAAGCACTCTGGTCCAACCA CAATGGTCCTCTACTTTACAGGGGCCACCAACATTCTTTACACCTTTGGTGGGCATGCTGTCACTGTGGAGATTATGCATGCGATGTGGAAGCCACAGAA GTTCAAGTCAATATACTTGATAGCAACACTTTATGTGTTCACCTTGACGATCCCATCAGCTTCTGCTGTTTATTGGGCATTTGGTGACCAATTGCTCACT CATTCTAATGCCATCTCTTTGCTCCCAAGGAATGGATTCAGAGACACTGCTGTTATCCTTATGCTCATCCATCAGTTCATAACATTTGGGTTTGCATGCA CTCCCTTGTACTTTGTGTGGGAGAAGTTCATAAGGGTACACAATGCAAAGAGTGTACTGAAAAGGGCATTGGCTAGGCTTCCTGTGGTGATCCCAATATG GTTCCTAGCCATCATCTTCCCTTTCTTTGGTCCCATCAACTCAACCGTTGGATCCCTCCTTGTTAGCTTCACCGTCTACATCATCCCGGCTTTGGCTCAC ATGGTTACTTTCTCATCTCCGTCAGCTCGCGAGAATGCAGTGGAGAGGCCAGGAAAAGTGATGGGAGGGTGGGTTGGACACTTCTGCATCAACATCTTTG TGGTGGTGTGGGTGTTTGTGGTTGGATTCGGGTTCGGAGGATGGGCTAGCATCACTAATTTCGTGCATCAAATTAACTCGTTCGGATTGTTCACTAAATG TTACCAATGTCCCCCTCCGACTCACAAGACTTAG
AA sequence Show only first row Show all	>Lus10028078 pacid=23181186 polypeptide=Lus10028078 locus=Lus10028078.g ID=Lus10028078.BGIv1.0 annot-version=v1.0 MASEKVETVVAGNYLEMESASATETDHGDGSSKELSTKSKFSTFFWHGGSAYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLMGSWTAYLI SILYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGKHWRNLGLIFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWS FLGLIMTTYTAWYLTIASITHGQAEGVKHSGPTTMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLIATLYVFTLTIPSASAVYWAFGDQLLT HSNAISLLPRNGFRDTAVILMLIHQFITFGFACTPLYFVWEKFIRVHNAKSVLKRALARLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAH MVTFSSPSARENAVERPGKVMGGWVGHFCINIFVVVWVFVVGFGFGGWASITNFVHQINSFGLFTKCYQCPPPTHKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77690		LAX3	like AUX1 3 (.1)		Lus10028078 [exp]	0	1
AT1G77690		LAX3	like AUX1 3 (.1)		Lus10025628 [exp]	1.0	0.9422
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10003259 [exp]	2.2	0.8437
AT5G44005			unknown protein		Lus10003609 [exp]	2.4	0.8661
AT5G02440			unknown protein		Lus10024400 [exp]	3.7	0.8681
AT5G44005			unknown protein		Lus10008220 [exp]	4.0	0.8555
					Lus10032581 [exp]	5.2	0.8288
AT5G44005			unknown protein		Lus10003610 [exp]	6.9	0.8359
AT4G19410			Pectinacetylesterase family pr...		Lus10034762 [exp]	9.2	0.7695
AT5G44005			unknown protein		Lus10003608 [exp]	10.5	0.8249
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10020727 [exp]	10.6	0.8321

Compare expression of checked genes

Lus10028078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.