Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13040 155 / 1e-43 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT2G01060 145 / 2e-41 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT3G04450 131 / 3e-35 GARP Homeodomain-like superfamily protein (.1.2) AT5G29000 130 / 4e-35 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) AT3G24120 127 / 1e-34 GARP Homeodomain-like superfamily protein (.1.2) AT3G04030 124 / 1e-32 GARP Homeodomain-like superfamily protein (.1.2.3) AT4G13640 122 / 1e-32 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT4G28610 122 / 4e-32 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT5G06800 120 / 1e-31 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT5G18240 120 / 2e-31 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040569 [exp] 533 / 0 AT3G13040 157 / 7e-44 myb-like HTH transcriptional regulator family protein (.1.2) Lus10040583 [exp] 525 / 0 AT3G13040 155 / 9e-43 myb-like HTH transcriptional regulator family protein (.1.2) Lus10035705 [exp] 150 / 7e-42 AT3G13040 372 / 4e-125 myb-like HTH transcriptional regulator family protein (.1.2) Lus10008197 [exp] 139 / 5e-38 AT5G29000 318 / 3e-105 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10037296 [exp] 138 / 3e-37 AT3G13040 364 / 5e-122 myb-like HTH transcriptional regulator family protein (.1.2) Lus10039124 [exp] 133 / 1e-36 AT2G01060 350 / 6e-122 myb-like HTH transcriptional regulator family protein (.1.2) Lus10016676 [exp] 125 / 1e-33 AT4G13640 380 / 2e-133 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10007132 [exp] 125 / 1e-33 AT4G13640 390 / 3e-137 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10027806 [exp] 120 / 2e-32 AT2G01060 172 / 6e-53 myb-like HTH transcriptional regulator family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G151400 [exp] 199 / 1e-60 AT3G13040 176 / 4e-50 myb-like HTH transcriptional regulator family protein (.1.2) Potri.007G003200 [exp] 158 / 9e-45 AT3G13040 330 / 1e-108 myb-like HTH transcriptional regulator family protein (.1.2) Potri.014G000700 [exp] 157 / 1e-44 AT3G13040 308 / 6e-101 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G001100 [exp] 146 / 1e-41 AT2G01060 318 / 5e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G000800 [exp] 144 / 8e-41 AT2G01060 321 / 1e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G191000 [exp] 128 / 3e-34 AT5G06800 252 / 2e-80 myb-like HTH transcriptional regulator family protein (.1.2) Potri.013G048000 [exp] 129 / 4e-34 AT5G29000 321 / 4e-106 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.019G020900 [exp] 126 / 4e-33 AT5G29000 306 / 4e-101 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.006G101000 [exp] 122 / 6e-33 AT2G01060 179 / 2e-55 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G047900 [exp] 124 / 1e-32 AT5G06800 233 / 3e-73 myb-like HTH transcriptional regulator family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10028102 pacid=23181168 polypeptide=Lus10028102 locus=Lus10028102.g ID=Lus10028102.BGIv1.0 annot-version=v1.0 ATGCCCCCTCTGGTCCTTGATGACCATAGCATGAAGAAACTGGAGGACTTACTTCACATGACAGAAGAAAACAGCAACTTCCATCCATTAATGCATCCTC ATGACGTGGTCAGTATGACATTGAAGGAAACCATGGGGTACCTTTCCAAAGAGCTTGACATCCCTCTTGATGACGTAGTAGACAACAATGATAAACCTGC TGGTCTGGAGGAAATTTTTGAACAGCCAACTGCTGGGAACAAAGATGATTACATGTCTGGAAGTAGCCATCAAAATTCTGAGGGTGCAGCTTCCCACAAG CAGAGAATAAGATGGACCACTGAGCTCCATGACCTTTTCTTCGAAGCAGTTACAACCCTCGGAGGCCCTGATGTTGCAACTCCGAAGCGCATACTGTCAA TTATGAACGTGGAGGGCTTAAACATCTACCATGTCAAGAGTCATTTACAGAAATATCGTCTCCAGACGCAAGAGAAAAGGATCCCCAGCGCTGTGGAAAA GAAATGTGATTCATCCAATAATGATAACCAAGTAAATATGAATCGAGACATGGTAGTGACTACAGCTCTACAAATGCAGATCGATGTTCAGAAGCTGCTA CACGATCAGCTTAAGGCACAAAAGCTGCTACAGTTGCGTATTGAACAGAACGGGGAGTTTCTGAAGAAGTTACTCGGAGAAGAACAGAAAATAACTCCCA GAAGCCGCCTTAATTCTCCTTCCTCCTCGACACAACAAATGGACCTGTCGCACTTTGCAGATGTCTCCTCACCTTCTCCTCAAAACTCAGCACCTTTTAC TGTAACAACTCGCAACAATTCATCTCAACTATCAAGTAATCACCAAACTGACTCTACTCATTCAAAATGTCACAAGCGGCTTCGAGATGACAGATAA
AA sequence Show only first row Show all	>Lus10028102 pacid=23181168 polypeptide=Lus10028102 locus=Lus10028102.g ID=Lus10028102.BGIv1.0 annot-version=v1.0 MPPLVLDDHSMKKLEDLLHMTEENSNFHPLMHPHDVVSMTLKETMGYLSKELDIPLDDVVDNNDKPAGLEEIFEQPTAGNKDDYMSGSSHQNSEGAASHK QRIRWTTELHDLFFEAVTTLGGPDVATPKRILSIMNVEGLNIYHVKSHLQKYRLQTQEKRIPSAVEKKCDSSNNDNQVNMNRDMVVTTALQMQIDVQKLL HDQLKAQKLLQLRIEQNGEFLKKLLGEEQKITPRSRLNSPSSSTQQMDLSHFADVSSPSPQNSAPFTVTTRNNSSQLSSNHQTDSTHSKCHKRLRDDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10028102 [exp]	0	1
					Lus10031873 [exp]	1.0	0.9541
AT2G45910			U-box domain-containing protei...		Lus10017798 [exp]	3.0	0.9301
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023021 [exp]	3.2	0.9090
					Lus10039025 [exp]	3.5	0.9308
AT2G34930			disease resistance family prot...		Lus10001035 [exp]	5.0	0.9201
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10024071 [exp]	5.7	0.9076
AT5G51160			Ankyrin repeat family protein ...		Lus10029089 [exp]	5.7	0.9028
AT1G18390			Protein kinase superfamily pro...		Lus10027117 [exp]	6.7	0.9051
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022929 [exp]	7.9	0.9127
AT2G39530			Uncharacterised protein family...		Lus10031303 [exp]	8.4	0.9170

Compare expression of checked genes

Lus10028102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.