Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18220 282 / 4e-92 Drug/metabolite transporter superfamily protein (.1) AT4G18210 273 / 3e-88 ATPUP10 purine permease 10 (.1) AT1G44750 263 / 3e-84 ATPUP11 purine permease 11 (.1.2.3) AT4G18197 251 / 2e-79 PEX17, ATPUP7, AT4G18200 PEROXIN 17, ARABIDOPSIS THALIANA PURINE PERMEASE 7, purine permease 7 (.1) AT4G18195 248 / 3e-78 ATPUP8, AT4G18200 ARABIDOPSIS THALIANA PURINE PERMEASE 8, purine permease 8 (.1) AT4G18205 243 / 1e-76 AT4G18200 Nucleotide-sugar transporter family protein (.1) AT4G18190 239 / 9e-75 ATPUP6 purine permease 6 (.1) AT4G08700 198 / 1e-59 ATPUP13 Drug/metabolite transporter superfamily protein (.1) AT5G41160 190 / 2e-56 ATPUP12 ARABIDOPSIS THALIANA PURINE PERMEASE 12, purine permease 12 (.1) AT1G28220 153 / 1e-42 ATPUP3 purine permease 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026130 [exp] 286 / 5e-93 AT4G18210 382 / 2e-131 purine permease 10 (.1) Lus10008689 [exp] 284 / 3e-92 AT4G18210 382 / 3e-131 purine permease 10 (.1) Lus10030927 [exp] 267 / 7e-86 AT4G18210 336 / 1e-113 purine permease 10 (.1) Lus10040118 [exp] 266 / 3e-85 AT4G18210 336 / 2e-113 purine permease 10 (.1) Lus10043350 [exp] 257 / 1e-81 AT1G44750 456 / 8e-161 purine permease 11 (.1.2.3) Lus10019503 [exp] 254 / 6e-81 AT1G44750 452 / 1e-159 purine permease 11 (.1.2.3) Lus10042836 [exp] 230 / 5e-75 AT4G18220 155 / 2e-47 Drug/metabolite transporter superfamily protein (.1) Lus10038492 [exp] 231 / 1e-71 AT4G18210 344 / 3e-116 purine permease 10 (.1) Lus10042835 [exp] 165 / 5e-49 AT4G18210 81 / 3e-18 purine permease 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G352200 [exp] 326 / 7e-109 AT4G18220 315 / 1e-105 Drug/metabolite transporter superfamily protein (.1) Potri.001G352100 [exp] 313 / 1e-103 AT4G18210 398 / 1e-137 purine permease 10 (.1) Potri.001G147600 [exp] 304 / 6e-100 AT4G18210 315 / 7e-105 purine permease 10 (.1) Potri.014G043900 [exp] 258 / 3e-82 AT1G44750 434 / 2e-152 purine permease 11 (.1.2.3) Potri.005G160300 [exp] 146 / 7e-40 AT1G28220 413 / 8e-145 purine permease 3 (.1) Potri.006G184900 [exp] 113 / 8e-28 AT2G24220 404 / 6e-141 purine permease 5 (.1.2) Potri.002G099600 [exp] 105 / 3e-25 AT1G28220 229 / 2e-72 purine permease 3 (.1) Potri.003G156900 [exp] 59 / 2e-09 AT1G30840 323 / 4e-108 purine permease 4 (.1.2) Potri.001G074100 [exp] 55 / 6e-08 AT1G30840 303 / 5e-101 purine permease 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10028132 pacid=23166472 polypeptide=Lus10028132 locus=Lus10028132.g ID=Lus10028132.BGIv1.0 annot-version=v1.0 ATGATGGAATTCAACAAGGTTCCTGATCCTAGCATCTGCCTCGTGCTCCAACGACCTGAAGGCGAGCTCTGCATCATCAGGGAAACGGAGATTCCGATAT ACGGTCTCCACCACATTACCACCATAGGATTGTTTGATCTCTTTGAAAGCCTCCGAGCCTGGGAAGTACTATCGGAAAGGGCAATCAGATGGGACACAGG CCTCGAGAATCAATCTGGTGTCGTTCCGAGAAGCGAGCAGGGAGCAACGTGGTGGGTTCGAGTAGGGGTTTACTCAATACTGGTTCTGGCAGGGCAGTCG GCGGCGACATTGCTGGGAAGGGTGTACTACGACAAAGGTGGGAGCAGTAAATGGATGGCAACCCTCATTGAATCAGCCGCTTTCCCAATCCTACTCCCAC TCTACTTCCTCCTACGACGACGACGAACCAACAACAACAATGAAACGACCCAAAGAAATTCAATTCTTGTTTCACTTCCATTCCTATCCTTGGCTTACTT CGCATTCGGGATACTAACCGCCGCCTTCAGTCTACTCTACGCCGTCGGCTTAAAATACCTCCCCGTCTCAACCTACTCGCTAATCTGCGCCACCCAATTA GGGTTCAACGCCTTCTTCTCCTTCTTCCTCAATTCCCAGAAGTTCACACCGTACATGATCAACTCCTTACTTCTCCTCACTCTTTCCTCCGTCCTCCTCG TCTTCCAATCCGACCAACAATCATCATCATCAACCTCCGCCGCCGATCACCGCCACCCATTCACTCACCGTCAATTCACGATTGGTTTCGTCTGTACGGT CGGGGCATCGGCGGGGTACGGACTACTGCTGTCGTTAACACAGCTTTTCCTCGAGAAGATTGCTCGAAAGGCGACGCTGAAGGAGGTTTTAGACGTGTTG GTGTACCCGTCGGTGGTGGCCACCGCGGCGGCGGCGGCGGGGTTGATGGGAAGCGGGGAGTGGAAGGGGATAAGTAAGGAAATGGAAGGGTTTGAAATGG GGGAGGTTTCGTATGTGATGACGTTGGTTTGGACTGCAATTTGTTGGCAGGTTTACTCCATTGGTTGCGTTGGGTTGATATTTGAGGTGTCGTCTCTGTT TTCCAATGTTATCGGGACGTTTGGATTGCCGCTTGTTCCTGTTCTGGCGGTGTTCTTTTTCAGAGATCGGATGGACGGTTTGAAGGCGGTGGCGATGGTT TTGGCGGTTTGGGGTTTTGTTTCGTATGTTTATCAGCATTATCTTGACCACCATCAAGGAGGAGGAAGGGGAGGAGGAGTCGCCGACGACCGGGAAGAAT CCGGTTCAAGTAGTACAAGCTAA
AA sequence Show only first row Show all	>Lus10028132 pacid=23166472 polypeptide=Lus10028132 locus=Lus10028132.g ID=Lus10028132.BGIv1.0 annot-version=v1.0 MMEFNKVPDPSICLVLQRPEGELCIIRETEIPIYGLHHITTIGLFDLFESLRAWEVLSERAIRWDTGLENQSGVVPRSEQGATWWVRVGVYSILVLAGQS AATLLGRVYYDKGGSSKWMATLIESAAFPILLPLYFLLRRRRTNNNNETTQRNSILVSLPFLSLAYFAFGILTAAFSLLYAVGLKYLPVSTYSLICATQL GFNAFFSFFLNSQKFTPYMINSLLLLTLSSVLLVFQSDQQSSSSTSAADHRHPFTHRQFTIGFVCTVGASAGYGLLLSLTQLFLEKIARKATLKEVLDVL VYPSVVATAAAAAGLMGSGEWKGISKEMEGFEMGEVSYVMTLVWTAICWQVYSIGCVGLIFEVSSLFSNVIGTFGLPLVPVLAVFFFRDRMDGLKAVAMV LAVWGFVSYVYQHYLDHHQGGGRGGGVADDREESGSSSTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18220			Drug/metabolite transporter su...		Lus10028132 [exp]	0	1
					Lus10042473 [exp]	7.2	0.7294
AT1G52790			2-oxoglutarate (2OG) and Fe(II...		Lus10005776 [exp]	9.5	0.7047
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10033437 [exp]	12.5	0.6884
					Lus10028788 [exp]	16.4	0.7513
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Lus10031735 [exp]	25.9	0.6791
AT3G01190			Peroxidase superfamily protein...		Lus10006756 [exp]	31.6	0.6875
AT3G05610			Plant invertase/pectin methyle...		Lus10020681 [exp]	35.4	0.6783
					Lus10002344 [exp]	37.2	0.7010
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10026128 [exp]	38.6	0.6650
AT2G46570		LAC6	laccase 6 (.1)		Lus10030235 [exp]	41.8	0.6956

Compare expression of checked genes

Lus10028132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.