Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56200 521 / 0 Transmembrane amino acid transporter family protein (.1) AT2G40420 479 / 4e-168 Transmembrane amino acid transporter family protein (.1) AT3G30390 402 / 1e-137 Transmembrane amino acid transporter family protein (.1.2) AT5G38820 392 / 2e-133 Transmembrane amino acid transporter family protein (.1) AT1G80510 282 / 3e-90 Transmembrane amino acid transporter family protein (.1) AT2G41190 60 / 2e-09 Transmembrane amino acid transporter family protein (.1) AT3G09330 53 / 3e-07 Transmembrane amino acid transporter family protein (.1) AT2G39130 52 / 5e-07 Transmembrane amino acid transporter family protein (.1) AT2G42005 52 / 6e-07 Transmembrane amino acid transporter family protein (.1) AT3G09340 52 / 7e-07 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042864 [exp] 816 / 0 AT3G56200 534 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10007716 [exp] 398 / 7e-136 AT3G30390 514 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10034353 [exp] 395 / 2e-134 AT3G30390 655 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10035140 [exp] 393 / 1e-133 AT3G30390 691 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10005099 [exp] 390 / 1e-132 AT3G30390 646 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10031964 [exp] 390 / 2e-132 AT3G30390 689 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10018652 [exp] 384 / 3e-130 AT5G38820 499 / 3e-175 Transmembrane amino acid transporter family protein (.1) Lus10036845 [exp] 353 / 7e-119 AT3G30390 561 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10034093 [exp] 295 / 3e-95 AT1G80510 658 / 0.0 Transmembrane amino acid transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G181800 [exp] 642 / 0 AT3G56200 511 / 3e-180 Transmembrane amino acid transporter family protein (.1) Potri.017G106300 [exp] 409 / 4e-140 AT3G30390 625 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.002G114300 [exp] 395 / 1e-134 AT3G30390 516 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.004G111400 [exp] 393 / 5e-134 AT3G30390 643 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.001G204400 [exp] 286 / 6e-92 AT1G80510 560 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.003G011900 [exp] 285 / 2e-91 AT1G80510 611 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.010G136601 [exp] 195 / 1e-58 AT3G30390 315 / 4e-105 Transmembrane amino acid transporter family protein (.1.2) Potri.008G075500 [exp] 115 / 1e-30 AT3G56200 101 / 6e-26 Transmembrane amino acid transporter family protein (.1) Potri.010G128300 [exp] 60 / 1e-09 AT1G25530 687 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G118000 [exp] 56 / 3e-08 AT1G25530 677 / 0.0 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10028165 pacid=23166558 polypeptide=Lus10028165 locus=Lus10028165.g ID=Lus10028165.BGIv1.0 annot-version=v1.0 ATGTCGCCGTCCACCGGAGAGTACGCTCCGCTACTTCCGGAACGGAAGAAGAAGCAAGGAGCGGAGGAGGAGGAACCCCGAGGTTCCATCTCAGGGGCGG TGTTCAATGTCTCCACTAGCATAATCGGAGCTGGAATCATGTCGATTCCTGCTACCATCAAGGTGCTGGGAGTAATCCCTGCGTTTCTGATGATCGTCGC CATCGCCTGGCTTGCTGACGTCTCTGTCGAGTTGCTATTGAGGTACACTCACTCCGGCCATTCCACCACTTACGCCGGAGTTATGAAGGAGGCCTTCGGG GGGTTCGGATCGGCGGCTGTTCAGATTTGCGTCATGATTACTAATCTTGGATGCTTGATTATTTACCAGATCATCATCGGGGATGTTCTGACAGGGAAGG GGGAGCACTTGGGAGTATTGCAAGAATGGTTTGGGGTTTCATGGTGGAATGCTAGGGCATTTGCACTCTTCCTGATTCTGATCTTTGTCATGCTTCCTTT GGTCATGTTCAAGCGACTTGAATCCCTCAAATTCAGTTCAGCCATATCAGTTCTGTTGGCAATAATTTTCGTTGCCATAAGCTCTGTGATGGCGATTTAT GCACTTATACAAGGAAAAACCAACACACCAAGACTGTTGCCTGAGTTGGAAAGCCAATCCTCCTTCTTTGAACTCTTCACTGCTGTCCCGGTGATCGTTA CAGCTTTCACATTCCATTTCAATGTGCATCCAATTGGGTTCGAGCTGGGGAGCCCTTCGATCATGCTATCCGCTGTCAGAATCTCAATGGTGCTATGTGC AGCCATCTACTTTGCAATCGGAATCTTCGGTTACCTTCTCTTCGGGGAATCAATCATGGCAGACATACTTGTGAACTTCGACAAGACCTCCGATACAGCA GTCGGTGCACTGCTGAACGACATTGTGCGGCTGAGCTATGCTCTCCACCTGATGCTGGTATTCCCCTTGCTGAACTTCTCCCTGAGGGCGAATCTCGACG AGTTCCTATTCCCAAACAAGCCCCTTCTGGCTAAAGACAACATCAGATTCTTATCCCTCACTTTTGCGTTGCTGTTGTTGAGTTACTTGCTGGCAATTGC CATACCAGACATATGGTATTTCTTTCAGTTCATGGGGTCAACTACTGCAGTTTGCCTTGCCTTCATTTTCCCTGGTTCTATTGTACTAAGGGATGTGTAT GGGATATCGACAAAGAGGGACAGGATATTGGGGGCAGTAATGATAGTGCTGGCTGTAATAACAAGCGCCATTGCAGTATCAAGTAATATCTATAGTTTGA TTGGTGATAACCAGTAG
AA sequence Show only first row Show all	>Lus10028165 pacid=23166558 polypeptide=Lus10028165 locus=Lus10028165.g ID=Lus10028165.BGIv1.0 annot-version=v1.0 MSPSTGEYAPLLPERKKKQGAEEEEPRGSISGAVFNVSTSIIGAGIMSIPATIKVLGVIPAFLMIVAIAWLADVSVELLLRYTHSGHSTTYAGVMKEAFG GFGSAAVQICVMITNLGCLIIYQIIIGDVLTGKGEHLGVLQEWFGVSWWNARAFALFLILIFVMLPLVMFKRLESLKFSSAISVLLAIIFVAISSVMAIY ALIQGKTNTPRLLPELESQSSFFELFTAVPVIVTAFTFHFNVHPIGFELGSPSIMLSAVRISMVLCAAIYFAIGIFGYLLFGESIMADILVNFDKTSDTA VGALLNDIVRLSYALHLMLVFPLLNFSLRANLDEFLFPNKPLLAKDNIRFLSLTFALLLLSYLLAIAIPDIWYFFQFMGSTTAVCLAFIFPGSIVLRDVY GISTKRDRILGAVMIVLAVITSAIAVSSNIYSLIGDNQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56200			Transmembrane amino acid trans...		Lus10028165 [exp]	0	1
AT1G11380			PLAC8 family protein (.1)		Lus10018410 [exp]	1.0	0.9871
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10036978 [exp]	2.0	0.9834
AT3G56310			Melibiase family protein (.1.2...		Lus10034218 [exp]	2.2	0.9798
AT3G01430			unknown protein		Lus10014527 [exp]	3.5	0.9788
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028247 [exp]	4.6	0.9811
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10025837 [exp]	4.7	0.9761
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10006498 [exp]	5.3	0.9808
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10019087 [exp]	6.3	0.9784
AT1G60010			unknown protein		Lus10030835 [exp]	7.3	0.9705
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10029572 [exp]	7.9	0.9787

Compare expression of checked genes

Lus10028165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.