Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05940 665 / 0 CAT9 cationic amino acid transporter 9 (.1) AT3G03720 234 / 3e-69 CAT4 cationic amino acid transporter 4 (.1.2) AT2G34960 223 / 3e-65 CAT5 cationic amino acid transporter 5 (.1) AT4G21120 221 / 3e-64 CAT1, AAT1 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) AT5G04770 216 / 2e-62 CAT6, ATCAT6 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) AT1G58030 215 / 7e-62 CAT2 cationic amino acid transporter 2 (.1) AT1G17120 214 / 8e-62 CAT8 cationic amino acid transporter 8 (.1) AT3G10600 207 / 2e-59 CAT7 cationic amino acid transporter 7 (.1) AT5G36940 206 / 8e-59 CAT3 cationic amino acid transporter 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042898 [exp] 933 / 0 AT1G05940 763 / 0.0 cationic amino acid transporter 9 (.1) Lus10023271 [exp] 243 / 9e-73 AT4G21120 902 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10005574 [exp] 223 / 7e-65 AT1G17120 811 / 0.0 cationic amino acid transporter 8 (.1) Lus10001581 [exp] 221 / 1e-62 AT4G21120 915 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10042817 [exp] 215 / 6e-62 AT4G21120 731 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10020322 [exp] 215 / 7e-62 AT1G58030 949 / 0.0 cationic amino acid transporter 2 (.1) Lus10005671 [exp] 215 / 1e-61 AT1G58030 958 / 0.0 cationic amino acid transporter 2 (.1) Lus10005687 [exp] 214 / 2e-61 AT3G03720 803 / 0.0 cationic amino acid transporter 4 (.1.2) Lus10020320 [exp] 213 / 2e-61 AT1G58030 912 / 0.0 cationic amino acid transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G137000 [exp] 705 / 0 AT1G05940 627 / 0.0 cationic amino acid transporter 9 (.1) Potri.010G241000 [exp] 232 / 1e-68 AT3G10600 781 / 0.0 cationic amino acid transporter 7 (.1) Potri.015G133100 [exp] 232 / 1e-68 AT4G21120 845 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.012G131300 [exp] 231 / 4e-68 AT4G21120 848 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.001G378500 [exp] 230 / 9e-68 AT1G17120 785 / 0.0 cationic amino acid transporter 8 (.1) Potri.008G017100 [exp] 225 / 4e-66 AT3G10600 778 / 0.0 cationic amino acid transporter 7 (.1) Potri.013G030833 [exp] 224 / 2e-65 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030900 [exp] 224 / 2e-65 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.019G039600 [exp] 215 / 1e-61 AT3G03720 797 / 0.0 cationic amino acid transporter 4 (.1.2) Potri.003G154600 [exp] 204 / 2e-58 AT2G34960 870 / 0.0 cationic amino acid transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00324 [flax] [poplar] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Lus10028195 pacid=23166416 polypeptide=Lus10028195 locus=Lus10028195.g ID=Lus10028195.BGIv1.0 annot-version=v1.0 ATGGTAGGCCAGCAGAGAATTCGATCTGCTACCTCTTCTTCATGGCTCTCTCAGTTATGGTCCTCAGCTCGTCGGTCAAAACCCTTGAATTCTCCTCATG ACACCAACCTCGCCCGGAATCCTCCCGACGGCCTTGTTCGTCGACTCGGCCTCTTCGACCTCATCCTCATCGGCGTCGGCGCTTCAATCGGCGCCGGAAT CTTCGTCGTCACTGGAACCGTCGCCCGCGACGCTGGACCTGGAGTTACGATTAGCTTCATACTAGCTGGACTCTCGTGTGTATTGAATGCACTTTGTTAT GCTGAGTTAGCCTCTCGATTACCTGCTGTTGTTGGAGGAGCATATCTATATACGTATTCGGCTTTCAATGAAATCACAGCTTTTCTTGTTTTTGGGCAAT TGATGCTTGATTACCACATTGGAGCGGCTAGCATAGCTCGGAGTTTAGCAAGTTATGTAGCTACACTTTTGGAGCTCTCTCCTGTATTCAGAGGTCTTCC GAGATGGGTTGGAAGTGGTGAAGAGTTTTTTGGTGGAACTGTGTCAATCAATCTATTAGCGCCAATTGTTCTCGCTCTGCTCACAATTATCTTATGTCGG GGTGTTGGAGAATCTTCCATTCTCAACTCAGTTATGACTGTCACAAAGGTTGTCATTGTCATCATTGTCATCTTTGTTGGTGCTTTCGAGGTTGATGTAG CTAATTGGACTCCTTTTGCTCCAAATGGCGTGAAAGCAATATTTACTGGTGCAACTGTGGTGTTCTTTGCTTATGTTGGTTTTGATGCAGTTGCAAATTC TGCTGAAGAATCAAAGAAACCACAGAGGGACTTGCCAATAGGAATCATCGGAAGCCTTTTCATTTGTATTGTTTTGTACATTGCGGTCTGTTTAGTGATC ACTGGGATGGTGCCTTATAATCTCATTGGTGAAGATGCTCCTCTCGCTGAAGCTTTCAGGTCCAAAGGCTTGAAATTTGTTACAGTATTAATCAGCATCG GTGCTGTTGCTGGATTGACAACAACACTTTTAGTTGGCCTTTATGTTCAGTCTCGACTATATCTTGGGCTTGGAAGGGATGGTCTTCTTCCTGCAGTTTT TGCCAAAGTGCATGCTTCTCGCCACACTCCTATCCATTCTCAAGTCTGGGTTGGCATCGTAGCTGCTATTTTGGCGGGATTATTTAATGTGTCGATCCTT TCGCACATTCTTTCAGTTGGTTCATTGACAGGTTATTCCGTTGTTTCTGCATGTGTTGTGACCCTTCGTTGGAATGATAAGCAAGTTTCTTCAAGGTGGA CTACAGCCTGGCAGGAAGGTGTCATTTGCCTTGTCGTAGTAGCTGGTTGTGGCTTTGCTACAGGCGTCTGTTACCGCTACGATGTTTCATTTATTGTTAT GATCATTGCAGTGGTAATAGCTGTAGCCTCCATCGTCGCTCTGTGTTTCCGCCAAGCATACAGAGATCCTCCAGGGTTTTCTTGTCCTGGGGTCCCTGTT ATACCGGCTGTTAGCATCTTCTTCAACATCTTCTTGTTTGCCCAGTTGCATGAAGAAGCGTGGGTAAGATTCGTGGTACTGAGCCTTATCATGGTTGTAG TGTATGCATTGTATGGTCAGTATCACGCCAAGCCAGGTGTAGATGAGACTATTGTTTACCATAGGGCACCTGCTGAAGAAGCATCTTTCTGA
AA sequence Show only first row Show all	>Lus10028195 pacid=23166416 polypeptide=Lus10028195 locus=Lus10028195.g ID=Lus10028195.BGIv1.0 annot-version=v1.0 MVGQQRIRSATSSSWLSQLWSSARRSKPLNSPHDTNLARNPPDGLVRRLGLFDLILIGVGASIGAGIFVVTGTVARDAGPGVTISFILAGLSCVLNALCY AELASRLPAVVGGAYLYTYSAFNEITAFLVFGQLMLDYHIGAASIARSLASYVATLLELSPVFRGLPRWVGSGEEFFGGTVSINLLAPIVLALLTIILCR GVGESSILNSVMTVTKVVIVIIVIFVGAFEVDVANWTPFAPNGVKAIFTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGIIGSLFICIVLYIAVCLVI TGMVPYNLIGEDAPLAEAFRSKGLKFVTVLISIGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPAVFAKVHASRHTPIHSQVWVGIVAAILAGLFNVSIL SHILSVGSLTGYSVVSACVVTLRWNDKQVSSRWTTAWQEGVICLVVVAGCGFATGVCYRYDVSFIVMIIAVVIAVASIVALCFRQAYRDPPGFSCPGVPV IPAVSIFFNIFLFAQLHEEAWVRFVVLSLIMVVVYALYGQYHAKPGVDETIVYHRAPAEEASF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05940		CAT9	cationic amino acid transporte...		Lus10028195 [exp]	0	1
AT2G17030			F-box family protein with a do...		Lus10023984 [exp]	4.6	0.8215
AT1G77140		ATVPS45, VPS45	vacuolar protein sorting 45 (....		Lus10028622 [exp]	4.9	0.8403
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10034651 [exp]	16.7	0.8333
AT2G22740		SDG23, SUVH6	SET DOMAIN PROTEIN 23, SU(VAR)...		Lus10011049 [exp]	18.7	0.8040
AT2G01650		PUX2	plant UBX domain-containing pr...		Lus10034612 [exp]	20.8	0.7796
AT5G49810		MMT	methionine S-methyltransferase...		Lus10026263 [exp]	22.0	0.7824
AT5G35160			Endomembrane protein 70 protei...		Lus10027831 [exp]	23.7	0.8098
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10014573 [exp]	24.5	0.7820
AT3G03210			unknown protein		Lus10010965 [exp]	25.0	0.8120
AT5G35160			Endomembrane protein 70 protei...		Lus10005060 [exp]	26.8	0.8149

Compare expression of checked genes

Lus10028195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.