Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49630 667 / 0 AAP6 amino acid permease 6 (.1) AT1G58360 653 / 0 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT1G10010 608 / 0 AAP8, ATAAP8 amino acid permease 8 (.1) AT5G09220 542 / 0 AAP2 amino acid permease 2 (.1) AT1G77380 535 / 0 AAP3, ATAAP3 amino acid permease 3 (.1) AT5G63850 532 / 0 AAP4 amino acid permease 4 (.1) AT1G44100 515 / 0 AAP5 amino acid permease 5 (.1) AT5G23810 386 / 2e-130 AAP7 amino acid permease 7 (.1.2) AT5G40780 166 / 4e-46 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G24400 156 / 2e-42 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007235 [exp] 839 / 0 AT5G49630 720 / 0.0 amino acid permease 6 (.1) Lus10029707 [exp] 542 / 0 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10029702 [exp] 536 / 0 AT1G77380 706 / 0.0 amino acid permease 3 (.1) Lus10042740 [exp] 536 / 0 AT1G77380 698 / 0.0 amino acid permease 3 (.1) Lus10018852 [exp] 531 / 0 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10036777 [exp] 529 / 0 AT1G77380 684 / 0.0 amino acid permease 3 (.1) Lus10037150 [exp] 525 / 0 AT1G77380 680 / 0.0 amino acid permease 3 (.1) Lus10029703 [exp] 522 / 0 AT1G44100 688 / 0.0 amino acid permease 5 (.1) Lus10035663 [exp] 505 / 6e-177 AT1G10010 569 / 0.0 amino acid permease 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G112100 [exp] 702 / 0 AT5G49630 691 / 0.0 amino acid permease 6 (.1) Potri.009G085000 [exp] 600 / 0 AT1G58360 546 / 0.0 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) Potri.005G068900 [exp] 552 / 0 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.009G133600 [exp] 548 / 0 AT5G09220 711 / 0.0 amino acid permease 2 (.1) Potri.007G100100 [exp] 541 / 0 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.002G079500 [exp] 534 / 0 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.002G079400 [exp] 534 / 0 AT1G77380 765 / 0.0 amino acid permease 3 (.1) Potri.005G181600 [exp] 530 / 0 AT1G77380 746 / 0.0 amino acid permease 3 (.1) Potri.002G080066 [exp] 525 / 0 AT1G77380 751 / 0.0 amino acid permease 3 (.1) Potri.002G079700 [exp] 521 / 0 AT1G77380 756 / 0.0 amino acid permease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10028236 pacid=23166444 polypeptide=Lus10028236 locus=Lus10028236.g ID=Lus10028236.BGIv1.0 annot-version=v1.0 ATGGGTGACGGCGAGTGCACACATAATAACGGCGGGGGAGAGGAGAGTACACACATAATAACGGCGGTGATAGGGTCAGGGGTGCTATCACTCGCTTGGG CCATAGCTCAGCTGGGTTGGGTGGCCGGACCGGTGGTGCTTCTCGCATTCTCCTTCATCACTTTATACACCTCCACACTACTAGCCGATGCATACAGGTC GCCCGACCCTGTCTCCGGCAAGCGTAACTACACCTACATGGACGCCGTGCGTGCTAGTGTCGGCGGAAGGAAGGTTCAGCTCTGTGGGATTGCTCAGTAC GGTAACTTGGTCGGGATCACCGTCGGTTACACTATCACCGCCTCCATCAGTATGGTAGCGGTGAAGAGATCGAACTGTTTCCACAAAGAAGGGCACGGGG CGGACAAGTGCCACGTGTCGAACAATCCATACATGGCGATATTTGGGTGTATCCAGTTAGTGCTCAGCCAGATCCCTAATTTCCATAAGCTGTCGTGGCT CTCCATTCTGGCGGCCGTCATGTCTTTTGCTTATTCCATTATTGGCCTCGGCCTCTCCATTGCCAAAGTTGCAGGAGGGGATACGGGAAAGACGACGTTA ACGGGAGTGAGGGTAGGGGTGGACGTGTCAGCAGCTCAGAAAGTGTGGAGGACGTTCCAAGCCATTGGAGATATCGCATTTGCATATGCATTCTCCACCG TTCTCATCGAAATTCAGGCATGTTTCCCTTTCCTACGTACTACTAGTCTTGTTATTATTATAACTCGTATGGTCCAGTCTGGCCCCAAGTACGATACTCT GAAATCGAGCCCACCGGAGAACAGATCAATGAAAAGGGGAAGCCTTGTCGGCATCATGACCACCACTCTTTTCTACGTTCTATGTGGCTGCGTAGGCTAC GCTGCCTTCGGTAACGACGCACCTGGCAATTTCCTTACTGGCTTCGGGTTCTACGAGCCTTTCTGGTTAATAGACTTGGCCAACATCTGCATTGCTATCC ATCTCGTTGGTGCCTACCAGGTCTTCTGCCAACCGATTTACAGCTTTGTAGAGAGCAGCTGTCGACGAAAGTGGCCGGAGAACAAGTTCATCACAAAGGA GCATACCGTAACAATCCCATTCTGCCGAGGAGCCTACTACAACGTCAACTTGTTCAGATTGGTGTGGAGGTCTGCGTATGTTGTGGTGACAGTCGTCTTG GCGATGATCTTCCCATTCTTCAACGACTTCCTCGGCCTCATCGGGGCAGCATCATTCTGGCCATTGACGGTGTATTTCCCAATAGAGATGTACATTGCCA GGGCCAAAATCCCAAAGTACTCCGTTACATGGACGTGGCTGCAAATATTAACTTGGACATGCCTGGCCGTCTCACTTCTTGCTGCAGCCGGATCGGTGGA AGGTCTTATCCAGTCTGTCAAGACTTACCAACCTTTCCAAAGTGGAGAGTAA
AA sequence Show only first row Show all	>Lus10028236 pacid=23166444 polypeptide=Lus10028236 locus=Lus10028236.g ID=Lus10028236.BGIv1.0 annot-version=v1.0 MGDGECTHNNGGGEESTHIITAVIGSGVLSLAWAIAQLGWVAGPVVLLAFSFITLYTSTLLADAYRSPDPVSGKRNYTYMDAVRASVGGRKVQLCGIAQY GNLVGITVGYTITASISMVAVKRSNCFHKEGHGADKCHVSNNPYMAIFGCIQLVLSQIPNFHKLSWLSILAAVMSFAYSIIGLGLSIAKVAGGDTGKTTL TGVRVGVDVSAAQKVWRTFQAIGDIAFAYAFSTVLIEIQACFPFLRTTSLVIIITRMVQSGPKYDTLKSSPPENRSMKRGSLVGIMTTTLFYVLCGCVGY AAFGNDAPGNFLTGFGFYEPFWLIDLANICIAIHLVGAYQVFCQPIYSFVESSCRRKWPENKFITKEHTVTIPFCRGAYYNVNLFRLVWRSAYVVVTVVL AMIFPFFNDFLGLIGAASFWPLTVYFPIEMYIARAKIPKYSVTWTWLQILTWTCLAVSLLAAAGSVEGLIQSVKTYQPFQSGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49630		AAP6	amino acid permease 6 (.1)		Lus10028236 [exp]	0	1
AT5G38760			Late embryogenesis abundant pr...		Lus10034100 [exp]	2.0	0.7677
AT3G01570			Oleosin family protein (.1)		Lus10028035 [exp]	2.2	0.6336
AT5G62280			Protein of unknown function (D...		Lus10041061 [exp]	8.9	0.6199
AT3G11920			glutaredoxin-related (.1)		Lus10034196 [exp]	12.6	0.6564
AT5G13790	MADS	AGL15	AGAMOUS-like 15 (.1)		Lus10039580 [exp]	15.5	0.6733
AT5G67420	AS2	ASL39, LBD37	ASYMMETRIC LEAVES2-LIKE 39, LO...		Lus10018697 [exp]	22.1	0.6003
AT3G49050			alpha/beta-Hydrolases superfam...		Lus10039240 [exp]	29.2	0.6422
					Lus10007681 [exp]	30.3	0.6184
AT4G38660			Pathogenesis-related thaumatin...		Lus10013561 [exp]	32.7	0.5964
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Lus10024771 [exp]	47.9	0.5138

Compare expression of checked genes

Lus10028236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.