Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55740 630 / 0 ATPROT2, ProT2 proline transporter 2 (.1.2) AT2G39890 628 / 0 ATPROT1, ProT1 proline transporter 1 (.1.2) AT2G36590 602 / 0 ATPROT3, ProT3 proline transporter 3 (.1) AT1G08230 144 / 3e-37 ATGAT1 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) AT5G41800 136 / 2e-34 Transmembrane amino acid transporter family protein (.1) AT5G40780 94 / 2e-20 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G48640 92 / 1e-19 Transmembrane amino acid transporter family protein (.1) AT1G71680 86 / 1e-17 Transmembrane amino acid transporter family protein (.1) AT1G24400 86 / 1e-17 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT1G67640 85 / 3e-17 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040238 [exp] 747 / 0 AT3G55740 673 / 0.0 proline transporter 2 (.1.2) Lus10009877 [exp] 682 / 0 AT2G39890 700 / 0.0 proline transporter 1 (.1.2) Lus10038639 [exp] 146 / 1e-37 AT1G08230 523 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10003903 [exp] 142 / 1e-36 AT5G41800 695 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10009386 [exp] 122 / 2e-29 AT1G08230 453 / 4e-157 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10008263 [exp] 97 / 7e-21 AT1G71680 572 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10014605 [exp] 91 / 4e-19 AT5G40780 744 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041581 [exp] 89 / 2e-18 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10022329 [exp] 89 / 2e-18 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G194600 [exp] 676 / 0 AT2G39890 702 / 0.0 proline transporter 1 (.1.2) Potri.008G062900 [exp] 671 / 0 AT2G39890 687 / 0.0 proline transporter 1 (.1.2) Potri.008G026700 [exp] 157 / 1e-41 AT1G08230 490 / 7e-172 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.005G219300 [exp] 155 / 3e-41 AT1G08230 226 / 7e-69 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.008G026600 [exp] 155 / 7e-41 AT1G08230 509 / 2e-179 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.009G149900 [exp] 147 / 3e-38 AT1G08230 573 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.003G138100 [exp] 145 / 1e-37 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.001G093600 [exp] 145 / 2e-37 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.015G091600 [exp] 101 / 1e-22 AT5G40780 610 / 0.0 lysine histidine transporter 1 (.1.2) Potri.008G179000 [exp] 100 / 2e-22 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10028251 pacid=23166561 polypeptide=Lus10028251 locus=Lus10028251.g ID=Lus10028251.BGIv1.0 annot-version=v1.0 ATGGGTCTGACAAAATGTTATTCATGGTTCCAAGTGGGATTCATTCTTACAACTGGAATCAACAGTGCGTATGTATTAGGTTACTCAGGGACCATTATGG TCCCTCTGGGTTGGTTTCCTGGAGTTATCGGTTTGGTTCTGGCCACTGCCATTTCACTGTATGCAAACTCTCTGGTTGCCAAGTTACATGAGTTTGGAGG CAAAAGACATATCAGATACAGAGACTTGGCTGGATTCATCTATGGTAAGAGAGCTTACTCTGTGACATGGGGTTTACAGTATGTGAATCTTTTCATGATC AACACTGGTTACATCATCCTAGCTGGTCAAGCCCTTAAGGCTGCATATGTGCTATTCAATGATGATGGTCAAATGAAGCTTCCATACTTCATAGCCATTG CTGGCGTTGTATGCGGCCTTTTCGCCATTGCTACTCCTCATTTGTCAGCTCTGAGAGTTTGGCTCGGAGTTTCGACAGTTCTTAGCTTGATATATATCGT TGTTGTCATTGTGCTCTCCATTAAAGACGGAGTCAACGCACCGGCTAGGGATTACAACATCCCGGGAACAACGACAAGCAAGATTTTTACAACGATCGGA GCATCTGCAAATCTTGTGTTTGCATTCAATACTGGAATGCTTCCAGAGATACAGGTAGATTCATGGTTCCAAGTGGGATTCATTCTTACAACTGGAATCA ACAGTGCGTATGTATTAGGTTACTCAGGGACCATTATGGTCCCTCTGGGTTGGTTTCCTGGTGTAATCGGTTTGGTTCTGGCCACTGCCATTTCACTGTA CGCAAACTCTCTGGTAGCCAAGTTACATGAGTTTGGAGGCAGAAGACATATCAGATACAGAGATTTGGCTGGATTCATCTATGGCAAGAGAGCTTACTCG GTTACATGGGGTTTACAGTATGTGAATCTTTTCATGATCAACACTGGTTACATCATCCTAGCTGGTCAAGCCCTTAAGGCTGCATATGTGCTATTCAATG ATGATGGTCAAATGAAGCTTCCATACTTCATAGCCATTGCTGGCGTTGTATGCGTCCTTTTCGCCATTGCAACTCCTCATTTGTCAGCTCTGAGAGTTTG GCTCGGAGTTTCGACAGTTCTAAGCTTGATATATATCGTTGTCGCCATTGTGCTCTCCATTAAAGACGGAGTCAACGCACCGGCTAGGGATTACAACATC CCGGGAACAACGACAAGCAAGATTTTTACAAAGATCGGAGCATCTGCAAATCTTGTGTTTGCATTCAATACAGGAATGCTTCCAGAGATACAGGCAACCA TAAAGCAGCCGGTAGTCAAGAACATGATGAAAGCACTCTACTTCCAGTTTTCGGCCGGAGTTCTACCAATTTATGCTGTTACTTTCATCGGTTATTGGGC GTATGGATCATCGACATCTACGTACTTGCTTAGCAGTGTGAACGGTCCGGTTTGGGTGAAGGCAATGGCTAACATTGCTGCATTCTTTCAGTCTGTCATA GCATTACATATATTCGCCAGTCCAATGTACGAGTACTTGGACACAAAGTACGGGATCACAGGGAGCCGTTTTGCAATCCACAACTTGACATTCAGGGTAG GAGTAAGAGGTGGATACCTTGCCATCAACACATTGGTTTCAGCACTTCTGCCATTCTTGGGAGATTTCATGAGCTTGACTGGGGCCATAAGCACGTTCCC CTTAACGTTCATTCTCGCGAACCATATGTACCTAATGGCTATGGGGAACAATTTGAGCTCTTTGAAAAGGGCCTGGCACTGGCTTAACGTGTGGTTCTTC GCGTTCATGTCGCTAGCAGCACTCATTGCTGCTCTTCGGCTCATTGCTGTCGATTCGAAAACTTATCACGTCTTTGCTGACTTATGA
AA sequence Show only first row Show all	>Lus10028251 pacid=23166561 polypeptide=Lus10028251 locus=Lus10028251.g ID=Lus10028251.BGIv1.0 annot-version=v1.0 MGLTKCYSWFQVGFILTTGINSAYVLGYSGTIMVPLGWFPGVIGLVLATAISLYANSLVAKLHEFGGKRHIRYRDLAGFIYGKRAYSVTWGLQYVNLFMI NTGYIILAGQALKAAYVLFNDDGQMKLPYFIAIAGVVCGLFAIATPHLSALRVWLGVSTVLSLIYIVVVIVLSIKDGVNAPARDYNIPGTTTSKIFTTIG ASANLVFAFNTGMLPEIQVDSWFQVGFILTTGINSAYVLGYSGTIMVPLGWFPGVIGLVLATAISLYANSLVAKLHEFGGRRHIRYRDLAGFIYGKRAYS VTWGLQYVNLFMINTGYIILAGQALKAAYVLFNDDGQMKLPYFIAIAGVVCVLFAIATPHLSALRVWLGVSTVLSLIYIVVAIVLSIKDGVNAPARDYNI PGTTTSKIFTKIGASANLVFAFNTGMLPEIQATIKQPVVKNMMKALYFQFSAGVLPIYAVTFIGYWAYGSSTSTYLLSSVNGPVWVKAMANIAAFFQSVI ALHIFASPMYEYLDTKYGITGSRFAIHNLTFRVGVRGGYLAINTLVSALLPFLGDFMSLTGAISTFPLTFILANHMYLMAMGNNLSSLKRAWHWLNVWFF AFMSLAALIAALRLIAVDSKTYHVFADL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55740		ATPROT2, ProT2	proline transporter 2 (.1.2)		Lus10028251 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Lus10010223 [exp]	2.8	0.8334
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10003329 [exp]	3.9	0.8259
AT5G09680		RLF	reduced lateral root formation...		Lus10019013 [exp]	5.9	0.8093
					Lus10033126 [exp]	5.9	0.8183
AT4G10030			alpha/beta-Hydrolases superfam...		Lus10006176 [exp]	7.4	0.7952
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028715 [exp]	8.1	0.8427
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10039344 [exp]	8.1	0.8167
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10024293 [exp]	9.5	0.7846
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Lus10022407 [exp]	11.6	0.8087
AT1G16040			unknown protein		Lus10015585 [exp]	17.9	0.7836

Compare expression of checked genes

Lus10028251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.