Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11320 499 / 4e-180 Nucleotide-sugar transporter family protein (.1) AT5G05820 489 / 5e-176 Nucleotide-sugar transporter family protein (.1) AT5G04160 416 / 6e-147 Nucleotide-sugar transporter family protein (.1) AT3G10290 415 / 6e-146 Nucleotide-sugar transporter family protein (.1) AT1G12500 367 / 3e-127 Nucleotide-sugar transporter family protein (.1) AT1G21870 164 / 5e-48 GONST5 golgi nucleotide sugar transporter 5 (.1) AT1G77610 162 / 3e-47 EamA-like transporter family protein (.1) AT5G25400 115 / 2e-29 Nucleotide-sugar transporter family protein (.1) AT5G11230 113 / 1e-28 Nucleotide-sugar transporter family protein (.1) AT4G32390 108 / 6e-27 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040234 [exp] 585 / 0 AT3G11320 527 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10009878 [exp] 511 / 0 AT3G11320 548 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10014832 [exp] 493 / 8e-177 AT3G11320 530 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10016446 [exp] 456 / 5e-163 AT5G05820 508 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10042039 [exp] 400 / 2e-140 AT3G10290 526 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10018043 [exp] 399 / 3e-140 AT3G10290 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10006684 [exp] 311 / 3e-106 AT1G12500 439 / 2e-156 Nucleotide-sugar transporter family protein (.1) Lus10007029 [exp] 294 / 9e-99 AT1G12500 457 / 2e-162 Nucleotide-sugar transporter family protein (.1) Lus10025645 [exp] 167 / 4e-49 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G194100 [exp] 502 / 0 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.008G063400 [exp] 500 / 2e-180 AT3G11320 566 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.001G247600 [exp] 462 / 1e-165 AT3G11320 476 / 4e-171 Nucleotide-sugar transporter family protein (.1) Potri.009G040800 [exp] 447 / 1e-159 AT5G05820 472 / 2e-169 Nucleotide-sugar transporter family protein (.1) Potri.016G043200 [exp] 425 / 1e-150 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.006G046600 [exp] 397 / 1e-139 AT5G04160 503 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.003G118000 [exp] 389 / 1e-135 AT1G12500 503 / 4e-180 Nucleotide-sugar transporter family protein (.1) Potri.001G114100 [exp] 381 / 2e-132 AT1G12500 483 / 8e-172 Nucleotide-sugar transporter family protein (.1) Potri.002G084500 [exp] 165 / 2e-48 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1) Potri.005G177200 [exp] 160 / 9e-47 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10028255 pacid=23166486 polypeptide=Lus10028255 locus=Lus10028255.g ID=Lus10028255.BGIv1.0 annot-version=v1.0 ATGGAGAAGTCAATTAAGGAGAACCTACCGTCGTCCTCCTCCTCCTTCCTCTTCACCGTCGGCCTAATCGCCTCCTGGTACACCTCCAACATCGGCGTCC TCCTCCTCAACAAGTTCCTCCTCAGCTTCTTTGGATTCAAGTTCCCAATCTTCCTCACCATGTGCCACATGACCTCCTGCAGCCTCTTCAGCTACGTCGC CATTGTTTGGGTGAAAATGGTCCCCTTGCAGACCATCCGATCCCGCTCCCAGTTCCTCAAGATCTCCTGCTTGAGCCTTGTCTTCTGCGTGTCGGTGGTG TTTGGAAACATCTCCCTCCGATTCCTCCCCGTTTCATTTACTCAGGCCGTCGGTGCTACTACACCTTTCTTCACTGCAGTGTTTGCTTATCTCATGACCT TCAAGAGGGAGGCCTGGCTCACTTATCTCACTCTGGTTCCGGTGGTTACTGGAGTCATCATTGCCAGTGGAGGTGAACCGAGCTTCGATCTCTTTGGATT TCTAATGTGCGTAGCTGCTACAGCTGCAAGAGCTCTCAAGTCAGTGATGCAGGGAATATTGCTTTCTTCCGAAGGGGAGAAGCTGAATTCCATGAACCTG CTAATGTACATGGCTCCAGTTGCTGTTGTGTTCTTGTTACCGGCTAGCCTGATGATGGAAGGGAATGTGGTTGGCATTACTGTGTCTCTCGCGAGAGATG ACAGCAAGATCGTCTGGTTGCTCTTCTCCAGCTCGGTTTTAGCGTTTTTTGTGAATTGGACCAACTTTTTGGTCACTAAACATACAAGCGCCCTCACACT CCAGGTTTTGGGAAATGCAAAGGGTGCCGTAGCGGTTGTGATCTCGATTCTCATCTTCAGAAACCCAGTATCTGTAACAGGAATGCTTGGTTACGGTCTA ACAGTATTCGGAGTCATCCTGTACAGTGAAGCCAAGAAACGAAGCAAGTGA
AA sequence Show only first row Show all	>Lus10028255 pacid=23166486 polypeptide=Lus10028255 locus=Lus10028255.g ID=Lus10028255.BGIv1.0 annot-version=v1.0 MEKSIKENLPSSSSSFLFTVGLIASWYTSNIGVLLLNKFLLSFFGFKFPIFLTMCHMTSCSLFSYVAIVWVKMVPLQTIRSRSQFLKISCLSLVFCVSVV FGNISLRFLPVSFTQAVGATTPFFTAVFAYLMTFKREAWLTYLTLVPVVTGVIIASGGEPSFDLFGFLMCVAATAARALKSVMQGILLSSEGEKLNSMNL LMYMAPVAVVFLLPASLMMEGNVVGITVSLARDDSKIVWLLFSSSVLAFFVNWTNFLVTKHTSALTLQVLGNAKGAVAVVISILIFRNPVSVTGMLGYGL TVFGVILYSEAKKRSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11320			Nucleotide-sugar transporter f...		Lus10028255 [exp]	0	1
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Lus10023792 [exp]	4.0	0.8589
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Lus10041857 [exp]	4.2	0.8940
AT3G49720			unknown protein		Lus10019279 [exp]	4.5	0.8881
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10039239 [exp]	4.9	0.8942
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10036337 [exp]	6.5	0.8890
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Lus10036485 [exp]	9.2	0.8849
AT3G06590	bHLH	bHLH148, AIF2	basic helix-loop-helix (bHLH) ...		Lus10017065 [exp]	9.5	0.8608
AT4G22550			Phosphatidic acid phosphatase ...		Lus10004345 [exp]	9.9	0.8718
AT5G37790			Protein kinase superfamily pro...		Lus10028518 [exp]	10.0	0.8492
AT1G12640			MBOAT (membrane bound O-acyl t...		Lus10006325 [exp]	11.2	0.8876

Compare expression of checked genes

Lus10028255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.