Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38080 755 / 0 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G01190 698 / 0 LAC10 laccase 10 (.1) AT5G03260 671 / 0 LAC11 laccase 11 (.1) AT5G58910 654 / 0 LAC16 laccase 16 (.1) AT5G60020 610 / 0 LAC17, ATLAC17 laccase 17 (.1) AT2G29130 589 / 0 LAC2, ATLAC2 laccase 2 (.1) AT5G05390 568 / 0 LAC12 laccase 12 (.1) AT1G18140 534 / 0 LAC1, ATLAC1 laccase 1 (.1) AT2G30210 518 / 2e-179 LAC3 laccase 3 (.1) AT2G40370 518 / 4e-179 LAC5 laccase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040697 [exp] 757 / 0 AT2G38080 828 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10018208 [exp] 753 / 0 AT2G38080 837 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10035517 [exp] 744 / 0 AT2G38080 907 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10017175 [exp] 733 / 0 AT2G38080 875 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10032894 [exp] 730 / 0 AT2G38080 894 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10027782 [exp] 722 / 0 AT2G38080 887 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10026512 [exp] 670 / 0 AT5G03260 919 / 0.0 laccase 11 (.1) Lus10002227 [exp] 668 / 0 AT5G03260 926 / 0.0 laccase 11 (.1) Lus10023189 [exp] 667 / 0 AT5G03260 930 / 0.0 laccase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G064000 [exp] 857 / 0 AT2G38080 728 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.010G193100 [exp] 848 / 0 AT2G38080 771 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.009G042500 [exp] 772 / 0 AT2G38080 891 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.001G248700 [exp] 765 / 0 AT2G38080 874 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.016G112100 [exp] 758 / 0 AT2G38080 891 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.016G112000 [exp] 757 / 0 AT2G38080 911 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G097000 [exp] 752 / 0 AT2G38080 914 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G097100 [exp] 752 / 0 AT2G38080 896 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G096900 [exp] 750 / 0 AT2G38080 899 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.007G023300 [exp] 677 / 0 AT5G03260 889 / 0.0 laccase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10028263 pacid=23166469 polypeptide=Lus10028263 locus=Lus10028263.g ID=Lus10028263.BGIv1.0 annot-version=v1.0 ATGGAGAGTCCGAGTAGCAATCGGTCGATATTAATCGCACTCGTCCTCCTTTGGCCAGCACTTGTCCATTGCGCTACTCGAAAGTACACATTCAACGTGG TGTCCACAAACACAACAAGGCTATGTTCAAGCAAGTCAGTGGTGTCCATTAATGGGAAAGTGCCCGGGCCGACCCTTTACGCTAGGGAAGATGACAATGT CCTTGTTAGAGTCAACAACCATGTCCCAAACAACATCAGCATCCATTGGCATGGAGTCAGGCAGCTTCGGACTGGTTGGTCGGATGGGCCGGCTTATGTT ACGCAATGTCCTATACAAAGTGGACAGAGCTACTTGTACAACTTTACACTAACAGGGCAGAGAGGGACACTGCTTTGGCATGCTCACATTTCATGGCTGA GGGCAACTGTGTATGGTGCCATTGTTATACTTCCAAAGAAGGGTGTTGCTTACCCTTTTCCAAAGCCTGATGGGGAGAAGGTTATTGTGCTAGGGGAATG GTGGAAAGTTGATGTAGAAGCAGTAGTGAATCAATCAACAACGACTGGAATGCCACCTAACATTTCAGATTCTCATACCATCAATGGCCATCCTGGCCCT GTCCCCAGCTGTCCTATTCCTGGTACCGTATATGTAATTTACCCCAGAGATTTTGCGCGCACAGGGTACACTCTCCACGTGGAAAGCGGCAAAACATACC TCCTCCGTATAGTCAACGCGGCACTCAACGACGAGCTCTTCCTCAAAATCGCCGACCACAAATTCACCGTCGTCGAAGCCGATGCCACCTACACGAAACC CTTCACCACCGACACAATCTTCCTCGGCCCCGGCCAAACCACAAACGCCCTACTCACCGCCGACCAAACTGCCGGAAAGTACATAATCGCCGTCTCCCCC TTCATGGACACGGTCGTCGCCGTCGACAACGTTACCGCCGTCGGATTCCTCCGTTACAAAGGTATCCCTCCCTTCTCTCCGCCGTACCTCACCGCTACCC CGGCGATAAACGCCACTGCCGTCACCGCTTCCTTCGCCGCCCATCTCAAGAGCCTCAATTCCGTTCAATTCCCCGCCGCCGTCCCTAAAACGGTGGACCA CTCCCTGCTCTTCGCGATCGGCATCGGAATCAACGCCTGCCCAACCTGCTTCAACGGAAGTAGGGCGGTGGCGGACATCAACAACGTCTCGTTCATCCTC CCCGCGGTGGCTCTGCTCCAGGCTCATTACTTTGGCGTGCAGGGAGTGTTCACTGACGATTTCCCGGAGAATCCGCCGTCTCCGTTCAATTACACCGGGG TTTCGACCCCCGGGAGTCTGCAGACGGAGAATGGGACTAGAGTTTATCGGCTAGCGTTTAACAGCACGGTGCAGGTTGTGCTTCAGGGGACGTCGGTGGT GGCGCCGGAGAGCCATCCGGTTCATCTCCATGGATTCAATTTCTTCGTGGTCGGGAAAGGATTGGGAAATTTCGATAAGGATAAAGATACGAGCAGCTTC AATTTGGTTGATCCGGTGGAGAGGAACACCATGAGTGTTCCGACGGCTGGATGGGCGGCCATCAGATTCAGAGCTGATAATCCAGGGATATGGTTCATGC ATTGCCATTTGGAGGTGCACACGACTTGGGGATTGAAGATGGCATTCGTAGTGGACAATGGCAAAGGTCCCAATCAGTCGATACTCCCACCTCCTCCCGA CCTTCCACAGTGCTAA
AA sequence Show only first row Show all	>Lus10028263 pacid=23166469 polypeptide=Lus10028263 locus=Lus10028263.g ID=Lus10028263.BGIv1.0 annot-version=v1.0 MESPSSNRSILIALVLLWPALVHCATRKYTFNVVSTNTTRLCSSKSVVSINGKVPGPTLYAREDDNVLVRVNNHVPNNISIHWHGVRQLRTGWSDGPAYV TQCPIQSGQSYLYNFTLTGQRGTLLWHAHISWLRATVYGAIVILPKKGVAYPFPKPDGEKVIVLGEWWKVDVEAVVNQSTTTGMPPNISDSHTINGHPGP VPSCPIPGTVYVIYPRDFARTGYTLHVESGKTYLLRIVNAALNDELFLKIADHKFTVVEADATYTKPFTTDTIFLGPGQTTNALLTADQTAGKYIIAVSP FMDTVVAVDNVTAVGFLRYKGIPPFSPPYLTATPAINATAVTASFAAHLKSLNSVQFPAAVPKTVDHSLLFAIGIGINACPTCFNGSRAVADINNVSFIL PAVALLQAHYFGVQGVFTDDFPENPPSPFNYTGVSTPGSLQTENGTRVYRLAFNSTVQVVLQGTSVVAPESHPVHLHGFNFFVVGKGLGNFDKDKDTSSF NLVDPVERNTMSVPTAGWAAIRFRADNPGIWFMHCHLEVHTTWGLKMAFVVDNGKGPNQSILPPPPDLPQC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10028263 [exp]	0	1
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10036619 [exp]	3.3	0.9808
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10015646 [exp]	4.9	0.9624
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10039873 [exp]	5.1	0.9768
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10017175 [exp]	5.3	0.9695
AT2G28110		IRX7, FRA8	IRREGULAR XYLEM 7, FRAGILE FIB...		Lus10041343 [exp]	8.4	0.9553
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10035836 [exp]	9.0	0.9701
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10023173 [exp]	10.6	0.9631
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10003363 [exp]	11.4	0.9662
AT1G07795			unknown protein		Lus10005894 [exp]	12.4	0.8942
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037664 [exp]	12.7	0.9485

Compare expression of checked genes

Lus10028263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.