Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38120 771 / 0 MAP1, WAV5, PIR1, AUX1 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) AT5G01240 764 / 0 LAX1 like AUXIN RESISTANT 1 (.1.2) AT1G77690 727 / 0 LAX3 like AUX1 3 (.1) AT2G21050 722 / 0 LAX2 like AUXIN RESISTANT 2 (.1) AT2G40020 60 / 3e-10 Nucleolar histone methyltransferase-related protein (.1.2.3) AT1G08230 57 / 3e-08 ATGAT1 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) AT1G45248 52 / 3e-08 Nucleolar histone methyltransferase-related protein (.1.2.3.4.5) AT5G41800 55 / 9e-08 Transmembrane amino acid transporter family protein (.1) AT5G40780 45 / 0.0001 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G48640 45 / 0.0002 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040212 [exp] 968 / 0 AT2G38120 798 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10004831 [exp] 778 / 0 AT2G38120 853 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10002498 [exp] 769 / 0 AT2G38120 842 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10025628 [exp] 737 / 0 AT1G77690 808 / 0.0 like AUX1 3 (.1) Lus10028078 [exp] 736 / 0 AT1G77690 810 / 0.0 like AUX1 3 (.1) Lus10025057 [exp] 725 / 0 AT2G21050 866 / 0.0 like AUXIN RESISTANT 2 (.1) Lus10034488 [exp] 723 / 0 AT2G21050 864 / 0.0 like AUXIN RESISTANT 2 (.1) Lus10040211 [exp] 235 / 1e-72 AT2G40020 57 / 1e-09 Nucleolar histone methyltransferase-related protein (.1.2.3) Lus10003903 [exp] 68 / 1e-11 AT5G41800 695 / 0.0 Transmembrane amino acid transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191000 [exp] 804 / 0 AT2G38120 734 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.008G066400 [exp] 802 / 0 AT2G38120 746 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.016G113600 [exp] 775 / 0 AT2G38120 796 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.006G098300 [exp] 769 / 0 AT2G38120 795 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.009G132100 [exp] 725 / 0 AT2G21050 832 / 0.0 like AUXIN RESISTANT 2 (.1) Potri.002G087000 [exp] 724 / 0 AT1G77690 745 / 0.0 like AUX1 3 (.1) Potri.004G172800 [exp] 723 / 0 AT2G21050 829 / 0.0 like AUXIN RESISTANT 2 (.1) Potri.005G174000 [exp] 716 / 0 AT1G77690 776 / 0.0 like AUX1 3 (.1) Potri.009G149900 [exp] 74 / 1e-13 AT1G08230 573 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.010G190800 [exp] 70 / 3e-13 AT2G40020 49 / 5e-07 Nucleolar histone methyltransferase-related protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein CL0214 [flax] [poplar] UBA PF10440 [flax] [poplar] WIYLD Ubiquitin-binding WIYLD domain
Representative CDS sequence Show only first row Show all	>Lus10028278 pacid=23166551 polypeptide=Lus10028278 locus=Lus10028278.g ID=Lus10028278.BGIv1.0 annot-version=v1.0 ATGTTGTCACAGAAGCAAGCTGAAGAAGCCATAGTTTCGAGCTTCGACGCCGAGACGACGGCAGCTCGACCTTCTTCCGCTTCTACAATTGGAGATCACT TGGAAGAGAAAGATCAAGACGATGGAGGAGATTCTCACCAGAATCATAGCCTCAAAAGCTTTTTCTGGCACGGCGGGTCTGTTTATGATGCCTGGTTCAG CTGCGCTTCCAATCAGGTGGCGCAAGTGCTGTTGACTCTGCCGTACTCGTTCTCGCAAATGGGGATGCTGTCAGGGATAATATTGCAGCTGTTCTACGGG TTCATGGGGAGCTGGACTGCTTATCTTATTAGTGTTCTTTATGTTGAGTACAGAACCAGAAAAGAAAAGGAGAACGTCAGCTTCAAGAACCATGTCATCC AATGGTTTGAAGTGCTGGATGGGTTACTGGGTCCAACTTGGAAAGCTATTGGATTGGCATTCAACTGCACTTTCCTCCTATTTGGCTCTGTCATTCAGCT CATTGCTTGTGCAAGTAACATATACTACGTCAACGACAAGTTTGACAAAAGGACATGGACGTACATATTTGGAGCTTGCTGTGCAACGACAGTGTTCGTC CCTTCTTTCCACAACTACAGAGTCTGGTCTTTCCTTGGCCTTGGTATGACCACTTACACCGCTTGGTATCTCACTGTTGCCGCCCTTATCCACGGCCAGG ACCCTGGAGTGGTTCACTCTGGACCCAAGAAGCTGGTCCTCTACTTCACTGGTGCTACCAACATACTCTACACATTTGGCGGCCATGCTGTTACTGTAGA AATAATGCATGCTATGTGGAAGCCACAGAAGTTCAAATACATATATCTTCTGGCGACATTGTATGTGTTCACCTTGACACTGCCATCAGCTGCAGCGATG TATTGGGCGTTTGGAGACCAGCTGCTGACTCACTCTAATGCTTTCGCCCTCTTACCTCGAACCGCCTGGCGCGATACTGCTGTCATCCTCATGCTGATTC ATCAGTTCATAACGTTCGGGTTCGCATGCACGCCGCTGTACTTCGTGTGGGAGAAAGTGGTGAGGATGCACGACACCAAGAGCATATTAAAGAGGGCAGT TACGAGATTGCCAGTGGTGGTACCCATTTGGTTCTTGGCCATTATTTTCCCATTCTTTGGTCCCATCAACTCCGCCGTGGGTGCTCTGCTTGTCAGCTTC ACTGTCTACATCATCCCTGCGCTCGCTCATATGCTCACTTACCGATCCCCCTCCGCTCGCCAGAATGCGGCCGAGAAGCCCCCGAGGTTCATGAAGAGCT GGACAGCAATGTACATGGTGAACGCATTCGTGGTCGGGTGGGTGTTTGTGGTCGGGTTCGGGTTAGGTGGATGGGCTAGTGTGACCAATTTCATAAGGCA AGTTAATACCTTTGGACTGTTTGCTAAGTGCTACCAGTGCCCCAAGCCGGGAAAGGTGGGTCTGAAGCGCGAGGATGCTGCAAAAGATGCAATGGACGTA TTAGGGTTCTCCCGGAAACTGATTAGCCAAACCATCAAGGAACTCTTGCTAGTTTACGGGGGCGATGAAGGATGGAGATTCATAGAGATGGATTCCTATA GAGTCCTGATTGACGCTATTCTGGAGAAAGGCGAGCCAGAGGTTGCTGCATCTTCACAGGTTGATGATGAAGGAGTGGAGAACAGCCATCGACAATCTGA AGTTGGATCCTCAAGTGAAACACTTACACCTGTTGTTGACACATACACTACCCCGTTACCATCGCTGGTCAGTGACGGTCTGGACAGCGGGTCGCGGATC GAGGCAGCTCAGAACCCTCCATTGATTATTCCTCAATCTAGTAATGGTGACCTTGCTTCTCTTAAGTATATGCTCTGTTGTATCTGA
AA sequence Show only first row Show all	>Lus10028278 pacid=23166551 polypeptide=Lus10028278 locus=Lus10028278.g ID=Lus10028278.BGIv1.0 annot-version=v1.0 MLSQKQAEEAIVSSFDAETTAARPSSASTIGDHLEEKDQDDGGDSHQNHSLKSFFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQMGMLSGIILQLFYG FMGSWTAYLISVLYVEYRTRKEKENVSFKNHVIQWFEVLDGLLGPTWKAIGLAFNCTFLLFGSVIQLIACASNIYYVNDKFDKRTWTYIFGACCATTVFV PSFHNYRVWSFLGLGMTTYTAWYLTVAALIHGQDPGVVHSGPKKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLLATLYVFTLTLPSAAAM YWAFGDQLLTHSNAFALLPRTAWRDTAVILMLIHQFITFGFACTPLYFVWEKVVRMHDTKSILKRAVTRLPVVVPIWFLAIIFPFFGPINSAVGALLVSF TVYIIPALAHMLTYRSPSARQNAAEKPPRFMKSWTAMYMVNAFVVGWVFVVGFGLGGWASVTNFIRQVNTFGLFAKCYQCPKPGKVGLKREDAAKDAMDV LGFSRKLISQTIKELLLVYGGDEGWRFIEMDSYRVLIDAILEKGEPEVAASSQVDDEGVENSHRQSEVGSSSETLTPVVDTYTTPLPSLVSDGLDSGSRI EAAQNPPLIIPQSSNGDLASLKYMLCCI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10028278 [exp]	0	1
AT3G59690		IQD13	IQ-domain 13 (.1)		Lus10027059 [exp]	2.4	0.9638
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10024272 [exp]	4.5	0.9615
AT3G59110			Protein kinase superfamily pro...		Lus10020747 [exp]	5.8	0.9402
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10040212 [exp]	7.7	0.9459
AT3G59110			Protein kinase superfamily pro...		Lus10029788 [exp]	8.1	0.9352
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Lus10006944 [exp]	9.2	0.9596
AT5G22400			Rho GTPase activating protein ...		Lus10022700 [exp]	9.9	0.9492
AT3G25290			Auxin-responsive family protei...		Lus10025878 [exp]	10.5	0.9452
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10030396 [exp]	10.8	0.9589
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Lus10014238 [exp]	11.8	0.9533

Compare expression of checked genes

Lus10028278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.