Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 306 / 4e-88 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 284 / 3e-79 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 224 / 5e-61 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT5G43470 152 / 1e-37 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G35450 150 / 6e-37 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59218 148 / 5e-36 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 148 / 5e-36 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G53350 147 / 5e-36 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58390 144 / 1e-34 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59620 140 / 9e-34 CW9 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042117 [exp] 1177 / 0 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 481 / 4e-151 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 445 / 3e-136 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10011278 [exp] 425 / 4e-131 AT3G14470 356 / 1e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 308 / 3e-88 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10022900 [exp] 304 / 1e-87 AT3G14470 350 / 2e-104 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 296 / 3e-83 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10024173 [exp] 295 / 4e-83 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10004126 [exp] 290 / 6e-83 AT3G14470 353 / 6e-106 NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G271800 [exp] 541 / 4e-175 AT3G14470 345 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Potri.006G273900 [exp] 537 / 2e-173 AT3G14470 364 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Potri.006G272066 [exp] 531 / 4e-171 AT3G14470 299 / 2e-85 NB-ARC domain-containing disease resistance protein (.1) Potri.006G275800 [exp] 504 / 1e-158 AT3G14470 345 / 3e-100 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121500 [exp] 392 / 8e-119 AT3G14470 483 / 9e-153 NB-ARC domain-containing disease resistance protein (.1) Potri.017G128000 [exp] 386 / 1e-116 AT3G14470 435 / 6e-135 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121700 [exp] 385 / 4e-116 AT3G14470 461 / 2e-144 NB-ARC domain-containing disease resistance protein (.1) Potri.017G137700 [exp] 380 / 1e-114 AT3G14470 437 / 7e-136 NB-ARC domain-containing disease resistance protein (.1) Potri.017G138100 [exp] 367 / 6e-110 AT3G14470 397 / 4e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.011G005900 [exp] 369 / 2e-109 AT3G14470 374 / 2e-111 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10028279 pacid=23166391 polypeptide=Lus10028279 locus=Lus10028279.g ID=Lus10028279.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTTCTCTCTTCAGCGTTGGCAAAACAGTTCTTGAGAAACTGGGTCCTCTCATCCAACAAGAGGTTTCCTCGCTATGGACTCTTCGAGCCG AGCTCGAGAAGCTGAAAGGCACCATGAGTGCCATTCAGGCGCACCTGCTCGACGCGGAGGAAAAGCAAGAACACAGCCATCAAGTCAAAGACTGGCTCGA GAAGCTGACAGTCTTACTGTACGACGCTGAGGATCTACTCGACGATGTTGCTACTGAAGATTTGCGCTCAACTGCACCCGATGATGATGATGATGATGAT GACTTGAGCTGCAAGATTCGATGCTGGAGTGCGGTATGCTTCCTTTTCATCTCCCTTCCAAACCGCTTGCTCTACGGTGTTAAAATGTCTCACCGAGTTA AGAGTCTTAGGGAGCAATTAGATGTCATATATGCTGATAACACCAACCTGCATTTGAATTTGAATCCTCGTTCCGAAGAGAAAGGGAAAATGCGGAATCA TGCGCGGTCAGTTTCTCTCATCCCGGACATAGTTGTCGGGAGAGAAGACGACATTAACAAGATCAAAACCCTTCTTCTGTCAGCTAATGATATCATCTCT GTGGTTTCCATAGTCGGCATTGGTGGTATGGGGAAAACCACACTTGCTCAGCTTGTTTATAACGATGAGGAAATCAAGGAGTGGTTCGAGTTAAGGCTGT GGGTATGCGTCTCCGAGGCATTCGAGACCAGTGTCATTGCTCGAAAAATTCTCGAGTCTGCCACAAAGGCGAAACAACCACAAGATCTCCAACTCGACAC ACTGACAACTCTCCTCGATAGAGAAATTCACGGAAAAAAGTACCTTCTGGTGCTAGACGATGTGTGGAACTTCGATCCGGAGAAATGGAGCGTTCTAAGA TCCGCACTCGCAAGAGGTGGCACCACCGGAAGCAAGATCCTCGTCACTACGAGGTTCGAGAATTTTGCAGAGTCGATGAGAATTCGTGGATCTCCCGCGC CTTACACTCTGCACGGTCTATCTCCTTCACTGTCATGGTCATTGGTTATGAAGGTAGCATTAGCATCATCATCAAATGATGGGAATATACAAAACATAAC AGGCCAAGAACAAGAAGAAGAAATCAAGAGGCTGATCATGAACAAGTCTGCTGGAGTACCTTTAGCAGTGAAAGCCATAGCAAACTTGTTACATTTTAAA AAGCCTCAAACTGAGTGGTTGACTTTCCTCAGGTCTAGTCAACTTCTAGGCGTTGGTCATCAGGGTAGCTTGCTGCATAACTTGAAACTAAGTTATGATT ACCTTCCTTCACATCTGAAACGTTGCTTTCTGTGCTGCATTGTGTACCCGAAAGGCTCGGTGATCAACGTCCAACACTTAATCTACCAATGGAGTGCTTT AGGCCTTATCAAGAAGCCGGATGATCATGATTCTCGTCAAAGTATATTCGAAATCGGTCTCGAGTATTTCACGGATTTGGCTTGGAGGTCATTTTTCCAA GAGATAAAACGAAACTGGGATGGAAACGTGAAACGTTGCAAAATGCATGATCTTATCCATGACCTTGCAACCTCAATAGCTGGATCTAGTTTTAAACAGT TAGATTTTGGCACAGATGAACTTAGTGAAAGAACTTATCATATCTGTCTGAATCATGGTTTGTGGTCACCTTCTGATCTTATCCTTCACCTCGGTAAAGC GAAACGTCTGCAGTCATTTTATCTCGGCAGTGAGAAATGGTGTAGATCAGGAACAAACTGGGATGAGTCCAGTTTCAAGTGTTTTGTTTTGAAATTCAGA AGCTTACGTATACTCGATTTCACCAACTCAGCGATGGAAATGGTGCCCCGTCAAATTCAAGACTTGAAGCATCTCAGGCTTCTCGATCTGTCATTCGAAG CAAAGATGACTTGCTTGCCAAGCAATATCACCATGCTTGTCCACTTACAAGTACTTGTTCTTCATGGTTGCAGAAGCCTCCAGGAGCTGCCAATGGATAT CATCAAGCTTGTCAATTTATGGTGCCTGAACGCAACTTGTTGCTTCGCACTGACTCACATGCCAAAAGGGCTTGGTAAACTCAGCCAGCTTGAGAAACTG ACATGGTTTGCAGTGGGAAAGGATAACGGGTTGAACGAGTTAAGCACGCTGAACAACTTGGGAGGCGAGCTCGAGATTGTGAATTTACGATACCTTCGTG ATCAAGGAACGATGAGTTCAGCGTTCGAGATTGGTGCATTAGCGAACATGAAGGCAAAGTGCCGTCTTGAATGGCTGCAGCTGCATTGGAACAATGGTGA CCTGGAAAAAGAAGATGTTGAGTGGGAAGAATGGTTGAACAAGTGCTCAGAAGAAGATGTTGAATGGGATGAGAGCTTACTTGAAAGCCTCGAACCGCAC TCGAATTTGAAAGTGCTTGATGTGTTTTGTTACAGAGGCTGGAATCTCCCTAGCTGGATTTCTTCTCTTACTAACTTAAAAGGGCTTACTTTGGCAATGT GCAAAGTTCGTCGCGGTTTGCACCACTTGCAAGGCTTGCCACTCCTCGAAAGGCTCATGCTTTTCCAGATGGTTGAGCTGGAGTACATGGATGAAGATGA AGAAGGCGATGAATTACTGTCGTTCTCCTTCTTCATCTCGCTCGAGTATCTTCAACTGAGTAACTGTCCTAAACTGAAGGGATGGAAGAAGAGTAAGAAG CAAGATACAACTCAGTTCTTCCCTAAACTTTCTAAACTTATTATACACGGATGCCCGCTGCTGGAATGGATGCCATCGTTCCCAACGCTCGATAACAAGC TCGAGCTTATGGACACTAGCCTGCAACCATTGATAGACACGATAAAATTCCGTGTTTCGGTTGATGTTCATCAGTACTACCCTCTGTCGAAGCTGAAGAA ATTGATCGTGACGAATATCTGTAACCCTCCGAAAGAGTGGCTGCAAGGGATGCAACACCTCACCTCTTTGCAAGAGATGAGAATCCAGAACTGTTCCGGA TTGGAGGAGACTTTGTACTGGAAGAACGTATCCCACGTTCCTAACATCTATGTCGATGGGCAGTTCATCGATCGAGAAACCAGGTCTTGGTTGGATGAAG ATGAGTGGAACGATTTCGGTTGGGTGCTACAGGCGATCTTGAAGGTGAATGCAGAAAGTGAAGGCTGA
AA sequence Show only first row Show all	>Lus10028279 pacid=23166391 polypeptide=Lus10028279 locus=Lus10028279.g ID=Lus10028279.BGIv1.0 annot-version=v1.0 MAAASLFSVGKTVLEKLGPLIQQEVSSLWTLRAELEKLKGTMSAIQAHLLDAEEKQEHSHQVKDWLEKLTVLLYDAEDLLDDVATEDLRSTAPDDDDDDD DLSCKIRCWSAVCFLFISLPNRLLYGVKMSHRVKSLREQLDVIYADNTNLHLNLNPRSEEKGKMRNHARSVSLIPDIVVGREDDINKIKTLLLSANDIIS VVSIVGIGGMGKTTLAQLVYNDEEIKEWFELRLWVCVSEAFETSVIARKILESATKAKQPQDLQLDTLTTLLDREIHGKKYLLVLDDVWNFDPEKWSVLR SALARGGTTGSKILVTTRFENFAESMRIRGSPAPYTLHGLSPSLSWSLVMKVALASSSNDGNIQNITGQEQEEEIKRLIMNKSAGVPLAVKAIANLLHFK KPQTEWLTFLRSSQLLGVGHQGSLLHNLKLSYDYLPSHLKRCFLCCIVYPKGSVINVQHLIYQWSALGLIKKPDDHDSRQSIFEIGLEYFTDLAWRSFFQ EIKRNWDGNVKRCKMHDLIHDLATSIAGSSFKQLDFGTDELSERTYHICLNHGLWSPSDLILHLGKAKRLQSFYLGSEKWCRSGTNWDESSFKCFVLKFR SLRILDFTNSAMEMVPRQIQDLKHLRLLDLSFEAKMTCLPSNITMLVHLQVLVLHGCRSLQELPMDIIKLVNLWCLNATCCFALTHMPKGLGKLSQLEKL TWFAVGKDNGLNELSTLNNLGGELEIVNLRYLRDQGTMSSAFEIGALANMKAKCRLEWLQLHWNNGDLEKEDVEWEEWLNKCSEEDVEWDESLLESLEPH SNLKVLDVFCYRGWNLPSWISSLTNLKGLTLAMCKVRRGLHHLQGLPLLERLMLFQMVELEYMDEDEEGDELLSFSFFISLEYLQLSNCPKLKGWKKSKK QDTTQFFPKLSKLIIHGCPLLEWMPSFPTLDNKLELMDTSLQPLIDTIKFRVSVDVHQYYPLSKLKKLIVTNICNPPKEWLQGMQHLTSLQEMRIQNCSG LEETLYWKNVSHVPNIYVDGQFIDRETRSWLDEDEWNDFGWVLQAILKVNAESEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14470			NB-ARC domain-containing disea...		Lus10028279 [exp]	0	1
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10013218 [exp]	4.9	0.9293
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10013830 [exp]	11.0	0.9231
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020360 [exp]	11.4	0.9210
AT1G29760			Putative adipose-regulatory pr...		Lus10034735 [exp]	12.4	0.9085
AT5G05340			Peroxidase superfamily protein...		Lus10029062 [exp]	14.3	0.9206
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10022292 [exp]	16.9	0.9176
AT4G10300			RmlC-like cupins superfamily p...		Lus10035660 [exp]	17.5	0.9135
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012869 [exp]	18.7	0.9069
AT2G03530		ATUPS2, UPS2	ARABIDOPSIS THALIANA UREIDE PE...		Lus10037075 [exp]	19.0	0.9060
AT1G26680	B3	REM17	transcriptional factor B3 fami...		Lus10026234 [exp]	25.0	0.8444

Compare expression of checked genes

Lus10028279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.