Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18330 912 / 0 AAA-type ATPase family protein (.1) AT4G36580 887 / 0 AAA-type ATPase family protein (.1) AT5G16930 788 / 0 AAA-type ATPase family protein (.1) AT3G03060 778 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G19740 90 / 2e-18 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 89 / 3e-18 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G80350 87 / 1e-17 FTR, FRC2, FRA2, BOT1, ATKTN1, AAA1, LUE1, ERH3, MAD5 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G04180 84 / 1e-16 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G53540 83 / 1e-16 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G27600 83 / 1e-16 ATSKD1, VPS4, SKD1 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041751 [exp] 1224 / 0 AT2G18330 915 / 0.0 AAA-type ATPase family protein (.1) Lus10031787 [exp] 796 / 0 AT3G03060 985 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031211 [exp] 736 / 0 AT3G03060 905 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017405 [exp] 94 / 1e-19 AT3G19740 1223 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010204 [exp] 92 / 6e-19 AT3G19740 1242 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10004891 [exp] 87 / 9e-18 AT2G27600 801 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10016124 [exp] 87 / 1e-17 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10020589 [exp] 87 / 1e-17 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10021441 [exp] 87 / 2e-17 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G023900 [exp] 964 / 0 AT4G36580 868 / 0.0 AAA-type ATPase family protein (.1) Potri.001G458200 [exp] 781 / 0 AT3G03060 910 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G143300 [exp] 778 / 0 AT5G16930 896 / 0.0 AAA-type ATPase family protein (.1) Potri.005G122300 [exp] 316 / 3e-101 AT4G36580 285 / 2e-89 AAA-type ATPase family protein (.1) Potri.015G007700 [exp] 88 / 2e-18 AT4G27680 615 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G057800 [exp] 88 / 4e-18 AT1G80350 814 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G176900 [exp] 88 / 4e-18 AT1G80350 809 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G022216 [exp] 87 / 4e-18 AT2G27600 701 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.009G144300 [exp] 87 / 5e-18 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.008G022300 [exp] 87 / 7e-18 AT2G27600 703 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12037 [flax] [poplar] DUF3523 Domain of unknown function (DUF3523) CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10028305 pacid=23165961 polypeptide=Lus10028305 locus=Lus10028305.g ID=Lus10028305.BGIv1.0 annot-version=v1.0 ATGGCCGCGTCGAGATTCTCCTCGTGCGCGGCGGCGGCCGCAGCTGTAGCTGCTGCGGTATCCGTCTCCACCGTGCAGAACAAAGCTTACGCAGACGGTG GATTTCGCTTCAACCCCTTTTCTTCTTCCCCGAAGCAACCAGCAGACCAACCGGCCGATGCTAACTCCGAAGCGAAGCAGCCTGAGCGGGAGGAGCCCAA GGGGTCCGGGTTCGATCCCGAGGCTTTGGAGCGAGGCGCTAAGGCTCTTAGGCAAATTAACAGCTCTCCTCTGTCGAAGCAGGTTTTTGATCTTATGAGG AGGCAGGAAGAGACACGATTGGCTGAAGTCGAAGCTGAGAAAGACCATTACGCAGCAATTCAGGCTAATAAGGATATTGACAGGCAGAGACAATTAGCTG AAGAGCAAAGAAACCTGGTTCGGCAACAAGCGCAGGCAAAGGCGCAGATTCTTCGCTACGAGGATGAATTGGCTAGAAAAAGAATGCAGACGGATCACGA AAGCCAGAGGAAACATAATGTAGAATTGGCTAGGATGCAAGAGCAGTCTAGTATACGAAAAGAACAAGCTAGGCGGTCTACTGAGGAGCAGATCCAAGCT CAGCAGCGCCAGACTGAGAAAGAGAGAGCTGAAATTGAGCGAGAAACCATAAGAGTCAAGGCTATGGCTGAGGCTGAAGGTCGTGCTCATGAGGCAAAAT TGACTGAGGAGCATAATAGGAGAATGCTTGTGGAAAAGATTAATGGTGAACGAGAAAAATGGCTAGCTGCAATCAATGCAACCTTTAGCCATATAGAAGG TGGTTTTAGGACATTATTTGATGATAGGAATAAGTTAATAATGACCGTCGGAGGAGCAACAGCATTGGCTGCAGGAATTTATACTACTAGAGAAGGAGCT AGGGTTACGTGGGGTTATATAAACAGAATACTGGGGCAGCCATCATTGATCCGTGAATCATCAATGTCCCGATTTCCACTGTCGAAGTTTGCAACTCAAG TAAAGAGCAAAATTAGAGGATATGGTACAGCATCTGTGACATCAGGACCTTTGGAAAGTAAAACTGGCTTCAAGGACATCATCCTTCACCCATCATTACA AAAGAGGATAGAGCACCTTTCCAGGGCTACTGCAAACACTAAAAGTCACGAGGCACCCTTTCGCAACATGATGTTCTATGGGCCTCCAGGCACTGGTAAA ACTATGGTTGCCAGGGAAATAGCTCGGAAATCGGGTTTGGACTATGCAATGATGACTGGAGGAGACGTTGCACCCCTTGGTGCAGAAGCTGTCACCAAAA TCCATCAGTTATTCGACTGGGCTAAGAAATCTCAAAAAGGACTACTGCTCTTCATTGACGAAGCTGATGCTTTCTTAAGCGAGCGTAATAGCACCCATAT GAGTGAAGCCCAACGGAGTGCTCTAAATGCACTGCTGTTCAGAACCGGAGATCAGTCGAGAGACATAGTTCTAGTTCTGGCCACAAACAGGCCAGGTGAT CTCGACAGCGCGGTGACCGATCGTATCGACGAGGTGATTGAATTCCCGCTTCCAGGTGAAGGCGAACGCTTTAAGTTGATAAACCTGTACTTGAAGAAGT ACCTTTCCGGGGAGGGGGACAGTGGAGAAGAACCCAAATGGAGCTTCTTCTTCAACAAGAAGCCGCAGAAGATAACAGTGAATGGCGTGACCGAGGAAGT AATCAGAGAGGCAGCGAAGAGAACTGAGGGGTTCTCGGGGCGAGAGATAGCGAAGCTCATGGCAAGTGTTCAGGCAGCTGTGTATGGGCGGCCGGACTGT GTGTTGGATTCGGAACTGTTGAAGGAAGTAGTGGATTATAAGGTTGCAGAGCATCACCAGAGAATCAAGCTGGCGTCTGAAGGTGGCCAGTCCTAG
AA sequence Show only first row Show all	>Lus10028305 pacid=23165961 polypeptide=Lus10028305 locus=Lus10028305.g ID=Lus10028305.BGIv1.0 annot-version=v1.0 MAASRFSSCAAAAAAVAAAVSVSTVQNKAYADGGFRFNPFSSSPKQPADQPADANSEAKQPEREEPKGSGFDPEALERGAKALRQINSSPLSKQVFDLMR RQEETRLAEVEAEKDHYAAIQANKDIDRQRQLAEEQRNLVRQQAQAKAQILRYEDELARKRMQTDHESQRKHNVELARMQEQSSIRKEQARRSTEEQIQA QQRQTEKERAEIERETIRVKAMAEAEGRAHEAKLTEEHNRRMLVEKINGEREKWLAAINATFSHIEGGFRTLFDDRNKLIMTVGGATALAAGIYTTREGA RVTWGYINRILGQPSLIRESSMSRFPLSKFATQVKSKIRGYGTASVTSGPLESKTGFKDIILHPSLQKRIEHLSRATANTKSHEAPFRNMMFYGPPGTGK TMVAREIARKSGLDYAMMTGGDVAPLGAEAVTKIHQLFDWAKKSQKGLLLFIDEADAFLSERNSTHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGD LDSAVTDRIDEVIEFPLPGEGERFKLINLYLKKYLSGEGDSGEEPKWSFFFNKKPQKITVNGVTEEVIREAAKRTEGFSGREIAKLMASVQAAVYGRPDC VLDSELLKEVVDYKVAEHHQRIKLASEGGQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18330			AAA-type ATPase family protein...		Lus10028305 [exp]	0	1
AT2G18330			AAA-type ATPase family protein...		Lus10041751 [exp]	1.0	0.9608
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10018881 [exp]	3.5	0.8892
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Lus10020369 [exp]	4.2	0.9195
AT1G63660			GMP synthase (glutamine-hydrol...		Lus10032268 [exp]	4.5	0.9191
AT4G02930			GTP binding Elongation factor ...		Lus10008161 [exp]	4.5	0.9239
AT1G63660			GMP synthase (glutamine-hydrol...		Lus10024632 [exp]	5.3	0.9047
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10018284 [exp]	5.9	0.9188
AT1G16280		SWA3, AtRH36	SLOW WALKER 3, Arabidopsis tha...		Lus10006326 [exp]	7.6	0.8410
AT3G18610		ATNUC-L2, PARLL...	PARALLEL1-LIKE 1, nucleolin li...		Lus10017403 [exp]	9.8	0.9126
AT1G56110		NOP56	homolog of nucleolar protein N...		Lus10017214 [exp]	9.8	0.8835

Compare expression of checked genes

Lus10028305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.