Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44670 147 / 4e-40 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G41540 147 / 6e-40 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G25510 145 / 2e-39 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G65850 145 / 2e-39 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G11170 145 / 2e-39 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G44480 144 / 6e-39 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G44630 144 / 7e-39 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G11250 143 / 1e-38 Disease resistance protein (TIR-NBS-LRR class) (.1) AT4G12010 142 / 2e-38 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 141 / 6e-38 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026201 [exp] 420 / 5e-139 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 288 / 7e-90 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10013729 [exp] 191 / 1e-56 AT5G36930 310 / 2e-92 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10014829 [exp] 175 / 1e-49 AT5G17680 441 / 1e-136 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10017419 [exp] 158 / 7e-45 AT4G12010 272 / 9e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10010222 [exp] 140 / 4e-40 AT4G11170 169 / 2e-47 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10029722 [exp] 147 / 6e-40 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 146 / 2e-39 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10017418 [exp] 145 / 4e-39 AT5G44510 335 / 1e-96 target of AVRB operation1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068200 [exp] 202 / 3e-59 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 186 / 1e-53 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 172 / 1e-48 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 164 / 1e-45 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070300 [exp] 156 / 4e-43 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 154 / 1e-42 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 149 / 2e-40 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G098500 [exp] 145 / 3e-39 AT5G17680 496 / 4e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 145 / 4e-39 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G037599 [exp] 144 / 5e-39 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10028343 pacid=23166172 polypeptide=Lus10028343 locus=Lus10028343.g ID=Lus10028343.BGIv1.0 annot-version=v1.0 ATGGCCGTCATTATCTTCTCCGATAACTACGCTTCCTCCGGATGGTGCCTGGATGAGCTCGTCAAAATCCTCCACTGCCGGAAACACTTCAGTCAGGTGG TTTTACCGGTCTTCTATGGCGTCTCTCCCTCTAATGTTCAGAATCTTACAGGAAATTGTGCTGCCGCATTCGCCAAGCTCCGATCATCGCCTTCGTCGTC GCCAGAGAAGTTGAGGATCTGGAAGGCTGCTTTGAGAGAGGCAGCCGATTTAGCCGGCTGTGATTCTCTCCATATCAGAACAGAGGCTGATCTTGTCAAA ATTGTTATTGAAAATGTTCTAGCAACATTGAATCAGATTTCGCCTACACCTCAGTTCACTGTGTTAGTTAGAATTCATACCCAAATGGATGATATAGAAT TCTTATTGCAGTTGGAATTGACCTCGAAAACCAGGATTGTAGGAATGTGGGGAATGGGTGGTGTGGGCAAAACCACCCTTGCTAGAGCTATATACGATGA GATCTCATCAAATTTTGAAGCGTGTCATTTCCTTGGCAACATAAGGGAAGAATTGGGAAGGCGCTCTGAACTTGGCTTGCAACACGAGCTCTTCACAAGC ATACTGGAGGATGATGATACCCCAACTCAAAGAAGCACAAATTTGGCACCAACTCTAGCGAGCAGTAAAGAGTTAGATAGCCTTTTATTTCAAGAGCCAC ACTGCAAAATTTCGGACAACAACACTCTCTTGTCAGTGTGTGATAGGATATCGATATCAGCAAGAAATAAGAGTTGA
AA sequence Show only first row Show all	>Lus10028343 pacid=23166172 polypeptide=Lus10028343 locus=Lus10028343.g ID=Lus10028343.BGIv1.0 annot-version=v1.0 MAVIIFSDNYASSGWCLDELVKILHCRKHFSQVVLPVFYGVSPSNVQNLTGNCAAAFAKLRSSPSSSPEKLRIWKAALREAADLAGCDSLHIRTEADLVK IVIENVLATLNQISPTPQFTVLVRIHTQMDDIEFLLQLELTSKTRIVGMWGMGGVGKTTLARAIYDEISSNFEACHFLGNIREELGRRSELGLQHELFTS ILEDDDTPTQRSTNLAPTLASSKELDSLLFQEPHCKISDNNTLLSVCDRISISARNKS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44670			Disease resistance protein (TI...		Lus10028343 [exp]	0	1
AT3G03770			Leucine-rich repeat protein ki...		Lus10005689 [exp]	2.0	0.8706
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Lus10039914 [exp]	6.9	0.8493
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10001416 [exp]	7.1	0.8445
AT3G59110			Protein kinase superfamily pro...		Lus10001423 [exp]	13.6	0.8399
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10034005 [exp]	14.0	0.8443
AT2G41150			unknown protein		Lus10023250 [exp]	17.3	0.8242
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10012770 [exp]	18.8	0.8314
AT4G16360			5'-AMP-activated protein kinas...		Lus10006390 [exp]	19.0	0.8094
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Lus10036219 [exp]	30.0	0.8058
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10017957 [exp]	30.2	0.8003

Compare expression of checked genes

Lus10028343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.