Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38620 242 / 2e-80 MYB AtMYB4 myb domain protein 4 (.1) AT4G09460 240 / 2e-80 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT2G16720 240 / 4e-80 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT4G34990 234 / 2e-77 MYB ATMYB32 myb domain protein 32 (.1) AT1G22640 229 / 6e-76 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT1G35515 228 / 8e-76 MYB MYB8, HOS10 high response to osmotic stress 10 (.1) AT5G16770 208 / 1e-66 MYB ATMYB9 myb domain protein 9 (.1.2) AT3G02940 207 / 3e-66 MYB ATMYB107 myb domain protein 107 (.1) AT4G21440 204 / 7e-65 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G28110 199 / 7e-64 MYB ATMYB41 myb domain protein 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041888 [exp] 377 / 8e-135 AT4G38620 245 / 5e-82 myb domain protein 4 (.1) Lus10000411 [exp] 240 / 1e-79 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10016948 [exp] 238 / 5e-79 AT4G09460 301 / 1e-103 myb domain protein 6 (.1) Lus10001548 [exp] 238 / 9e-79 AT4G09460 291 / 2e-99 myb domain protein 6 (.1) Lus10009448 [exp] 236 / 2e-78 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10033473 [exp] 229 / 5e-76 AT2G16720 249 / 2e-83 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10014129 [exp] 233 / 3e-72 AT4G38620 284 / 5e-90 myb domain protein 4 (.1) Lus10018418 [exp] 203 / 1e-64 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10002593 [exp] 199 / 6e-63 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G112000 [exp] 253 / 3e-85 AT4G38620 277 / 5e-94 myb domain protein 4 (.1) Potri.019G081500 [exp] 240 / 1e-79 AT1G22640 277 / 1e-93 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.004G174400 [exp] 239 / 2e-79 AT4G38620 305 / 2e-104 myb domain protein 4 (.1) Potri.009G134000 [exp] 239 / 2e-79 AT4G38620 305 / 2e-104 myb domain protein 4 (.1) Potri.004G138000 [exp] 237 / 3e-78 AT4G38620 257 / 8e-85 myb domain protein 4 (.1) Potri.T011525 [exp] 236 / 6e-78 AT4G38620 257 / 5e-85 myb domain protein 4 (.1) Potri.T011400 [exp] 236 / 6e-78 AT4G38620 257 / 5e-85 myb domain protein 4 (.1) Potri.013G109300 [exp] 236 / 6e-78 AT4G09460 262 / 9e-88 myb domain protein 6 (.1) Potri.010G114000 [exp] 209 / 2e-68 AT4G38620 243 / 6e-81 myb domain protein 4 (.1) Potri.017G128900 [exp] 202 / 2e-65 AT4G09460 222 / 6e-73 myb domain protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10028435 pacid=23166133 polypeptide=Lus10028435 locus=Lus10028435.g ID=Lus10028435.BGIv1.0 annot-version=v1.0 ATGGGAAGGTCTCCTTGCTGCGAGAGGGCTCACACAAACAAAGGAGCATGGTCCAGGGAAGAAGACGAGCGTTTGGTTTCTTACATAAAAGCTCACGGTG AAGGCGGCTGGAGATCCCTTCCCAAATCCGCTGGCCTCCTCAGATGTGGGAAAAGCTGCAGGCTTAGGTGGATGAATTACCTTCGACCTGATCTCAAGCG CGGTAATTTCACCTGCCAAGAAGATGAGCTCATCATCAGACTCCACAGCCTCCTTGGCAACAAGTGGTCTGTGATAGCCGGGAAGTTGCCGGGACGGACA GACAACGAGATCAAGAACTATTGGAACACGCACCTCAAGAGGAAGCTGCTGGGAAAAGGGATTGATCCTTTGACTCATCGCCAGATCGGAGCTGAAGACG AAAAAGAAGAAGAAGAAGAAGGAAATGGCTCTGTTTTCAGTGAAGAGGTGAATGAAGCGAATGATAACAGCTCTGGCGTTGGAATGTCGAGGGAAAGAGA TGAAGTGGCCGACGAGGAATTGAACCTCGAGCTGAGGATGTGCCCTCCTTCTCCTCGTCGCCATGGACCGATGTCACGGCCATTGGAGGAGGAAGGATCA TCAAGTGCAGTAATGGTGGAAGGAAGGAAATATTGGTTGGTCGATATGATTAGATAG
AA sequence Show only first row Show all	>Lus10028435 pacid=23166133 polypeptide=Lus10028435 locus=Lus10028435.g ID=Lus10028435.BGIv1.0 annot-version=v1.0 MGRSPCCERAHTNKGAWSREEDERLVSYIKAHGEGGWRSLPKSAGLLRCGKSCRLRWMNYLRPDLKRGNFTCQEDELIIRLHSLLGNKWSVIAGKLPGRT DNEIKNYWNTHLKRKLLGKGIDPLTHRQIGAEDEKEEEEEGNGSVFSEEVNEANDNSSGVGMSRERDEVADEELNLELRMCPPSPRRHGPMSRPLEEEGS SSAVMVEGRKYWLVDMIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10028435 [exp]	0	1
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10037048 [exp]	2.8	0.9264
AT1G54730			Major facilitator superfamily ...		Lus10029966 [exp]	4.6	0.9242
AT2G47010			unknown protein		Lus10000888 [exp]	4.6	0.8990
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10021515 [exp]	6.9	0.9246
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10018886 [exp]	6.9	0.9160
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10009155 [exp]	7.2	0.9105
AT3G24200			FAD/NAD(P)-binding oxidoreduct...		Lus10011740 [exp]	7.4	0.9111
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10011126 [exp]	7.5	0.9122
AT4G29430		RPS15AE	ribosomal protein S15A E (.1)		Lus10040543 [exp]	8.2	0.8935
AT5G48340			unknown protein		Lus10041085 [exp]	8.7	0.9203

Compare expression of checked genes

Lus10028435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.