Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50930 321 / 1e-103 BCS1 cytochrome BC1 synthesis (.1) AT3G50940 313 / 3e-102 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17760 298 / 5e-96 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G18190 294 / 2e-94 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18193 293 / 5e-94 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17730 284 / 9e-91 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17740 286 / 1e-90 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 267 / 4e-84 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G43910 263 / 2e-82 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28600 262 / 2e-82 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041918 [exp] 813 / 0 AT3G50930 383 / 2e-126 cytochrome BC1 synthesis (.1) Lus10037004 [exp] 302 / 1e-97 AT3G50930 457 / 9e-159 cytochrome BC1 synthesis (.1) Lus10015802 [exp] 301 / 2e-97 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014284 [exp] 300 / 9e-97 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1) Lus10025989 [exp] 296 / 1e-96 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1) Lus10024275 [exp] 288 / 8e-92 AT3G50940 434 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003213 [exp] 282 / 3e-89 AT5G17740 430 / 7e-146 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014496 [exp] 275 / 1e-86 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10007391 [exp] 272 / 1e-85 AT3G50940 424 / 2e-145 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G012400 [exp] 462 / 1e-160 AT3G50940 367 / 2e-123 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G177200 [exp] 322 / 3e-105 AT3G50940 401 / 4e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020500 [exp] 316 / 1e-103 AT2G18193 511 / 1e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020600 [exp] 315 / 4e-102 AT2G18193 553 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G119900 [exp] 307 / 2e-99 AT5G17760 512 / 3e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G020900 [exp] 307 / 2e-99 AT3G50930 561 / 0.0 cytochrome BC1 synthesis (.1) Potri.010G057900 [exp] 295 / 2e-95 AT3G50930 396 / 1e-133 cytochrome BC1 synthesis (.1) Potri.007G020800 [exp] 295 / 1e-94 AT5G17760 506 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G032700 [exp] 290 / 3e-93 AT3G50930 437 / 1e-149 cytochrome BC1 synthesis (.1) Potri.009G119132 [exp] 291 / 1e-92 AT3G50930 484 / 3e-166 cytochrome BC1 synthesis (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05278 [flax] [poplar] PEARLI-4 Arabidopsis phospholipase-like protein (PEARLI 4) CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10028463 pacid=23166131 polypeptide=Lus10028463 locus=Lus10028463.g ID=Lus10028463.BGIv1.0 annot-version=v1.0 ATGCGGTGGGCCTACCACTCGGAGACGAACTCTGCGATCCACTTCGAGCTCCGGTGGTTCGAGCTCCGGATTAATAGAAAGTACGGCGAATTGGCGAAGA GCAAGTACATCCCTCACATCCTCGATTCGGCGAAGAGAATTAGGGATCTGAGCAGAGTGGTGAAGTTCTACAGTACGAAAACGGGGAGGGACGGGTGGAG CTCGAAAGGGAGGAATCTGGAGCATCCGATGAGCTTTGATACGCTGGCGATGGACGGAGATCTGAAAAAGAGAGTGATCGACGATCTGGATTCGTTCGTC GGAGCTAGGGATTATTACAGGAAAATTGGGAAAGTGTGGAAAAGAGGGTATTTACTGTATGGCCCTCCTGGAACTGGGAAATCCAGCCTGATTGCTGCGA TGGCCAACTACTTGAACTTCGATATTTACAATTTGAACCTTTCGGTCGTCAATTCCGACTCTTCGCTTGAGTATTTGCTGCTTCACATGTCCAATCGATC GATTCTGGTGGTTGAAGATATCGATTGCTCCGTAATGTTGCAGAATCGTGAAGCCGCCATGGATCCATCCCTTCCAGAGTCGACTCGGAATCATGGTAAT CCGACGATGCAAATACCTCCTCGCCCAAATCAGGTGACACTATCTGGGCTGCTAAACGCGATTGACGGGCTCCTGTCGTGCTGCGGGGACGAGCGAATTG TGGTGTTCACTACGAATTACAAAGATAGGATTGATCCTGCTCTGTTGAGAGCAGGACGTATGGATATGCATATTAACTTAACGTATTGTACATTCTCGAC GTTTAAGCAACTCACTGCTAATTATTTGGAGATTAAGGATCACACATTGTTTGAACAAGTGGAGAAGTTGATATTAGAAGTTGAGGTGTCTCCGGCAGAG ATTGCAGGAGAGCTTATGAAAGACAGAGATCCAGATAGTTGTCTAAATGGTATCGTCAGGTTTCTTGAAATCAAGAAAGCAGAAGTGAAACTGAAACCAT CTCCGCCGGAAGAAGAAGAAACTCGTGGTGGGGACGAGACGGGTGACAAGGACGAGAAGGAAGCGAACGGGGTCGTTGATTGCGATTCGAAGATGGAAGT CGGTGGGTACATGATTGCGGAACACTTGGCATCGACGTTGGAATCCGTCCTCGCGGAACACGGAGACATTGCTGCAAACTGCACATTGCAGACTAAGGAT TGCCGATCGCTGTTTTTAGAACTTGTTTGTGAAATGGCGAAGAAGCTGGAAGCGTCAGAAGAGAAGAAGCTAACGAAAGCTGAGGTGGCCTCCATGAGAA ACTGTATTAGAGATATGCAGTCGATGAAATTGGAGGTGGGTTGGCTTAGTGGACGATTGGGTGAGATTAATATTGTTCCCTTCATCTCTAATGGAACAGT GGGAGTGCCGCCGTGA
AA sequence Show only first row Show all	>Lus10028463 pacid=23166131 polypeptide=Lus10028463 locus=Lus10028463.g ID=Lus10028463.BGIv1.0 annot-version=v1.0 MRWAYHSETNSAIHFELRWFELRINRKYGELAKSKYIPHILDSAKRIRDLSRVVKFYSTKTGRDGWSSKGRNLEHPMSFDTLAMDGDLKKRVIDDLDSFV GARDYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYLNFDIYNLNLSVVNSDSSLEYLLLHMSNRSILVVEDIDCSVMLQNREAAMDPSLPESTRNHGN PTMQIPPRPNQVTLSGLLNAIDGLLSCCGDERIVVFTTNYKDRIDPALLRAGRMDMHINLTYCTFSTFKQLTANYLEIKDHTLFEQVEKLILEVEVSPAE IAGELMKDRDPDSCLNGIVRFLEIKKAEVKLKPSPPEEEETRGGDETGDKDEKEANGVVDCDSKMEVGGYMIAEHLASTLESVLAEHGDIAANCTLQTKD CRSLFLELVCEMAKKLEASEEKKLTKAEVASMRNCIRDMQSMKLEVGWLSGRLGEINIVPFISNGTVGVPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10028463 [exp]	0	1
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Lus10013201 [exp]	4.6	0.8295
AT2G23780			RING/U-box superfamily protein...		Lus10016796 [exp]	5.9	0.8499
AT5G39670			Calcium-binding EF-hand family...		Lus10007536 [exp]	9.2	0.8481
AT4G33780			unknown protein		Lus10037250 [exp]	10.0	0.8495
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Lus10030718 [exp]	11.0	0.7603
AT5G39670			Calcium-binding EF-hand family...		Lus10026301 [exp]	14.3	0.8320
AT5G42050			DCD (Development and Cell Deat...		Lus10032412 [exp]	14.9	0.8313
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10021185 [exp]	15.9	0.8099
AT4G27280			Calcium-binding EF-hand family...		Lus10033753 [exp]	16.5	0.8471
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10041918 [exp]	19.6	0.7804

Compare expression of checked genes

Lus10028463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.