Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66350 317 / 3e-102 GRAS RGL1 RGA-like 1 (.1) AT3G03450 302 / 4e-96 GRAS RGL2 RGA-like 2 (.1) AT1G14920 297 / 2e-94 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT2G01570 298 / 8e-94 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT5G17490 247 / 3e-75 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT5G48150 133 / 2e-33 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 129 / 2e-32 GRAS SCL21 SCARECROW-like 21 (.1) AT1G50420 125 / 1e-30 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) AT1G55580 122 / 6e-30 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT1G50600 120 / 8e-29 GRAS SCL5 scarecrow-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017626 [exp] 443 / 2e-150 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10033583 [exp] 434 / 1e-146 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10009133 [exp] 331 / 3e-112 AT1G14920 286 / 3e-95 RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) Lus10017758 [exp] 205 / 4e-59 AT2G01570 454 / 4e-155 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10033061 [exp] 142 / 2e-40 AT1G14920 143 / 2e-41 RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) Lus10041540 [exp] 152 / 4e-39 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 151 / 8e-39 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10036932 [exp] 142 / 1e-36 AT1G66350 258 / 1e-79 RGA-like 1 (.1) Lus10037055 [exp] 142 / 1e-36 AT1G66350 258 / 5e-80 RGA-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G125200 [exp] 424 / 2e-142 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 419 / 8e-141 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 341 / 2e-110 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 332 / 4e-107 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.001G326000 [exp] 154 / 5e-40 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.005G095100 [exp] 151 / 1e-39 AT1G66350 252 / 3e-77 RGA-like 1 (.1) Potri.012G093900 [exp] 140 / 5e-36 AT1G66350 257 / 2e-79 RGA-like 1 (.1) Potri.015G091200 [exp] 140 / 6e-36 AT1G66350 256 / 4e-79 RGA-like 1 (.1) Potri.016G027800 [exp] 137 / 3e-35 AT1G14920 244 / 1e-75 RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) Potri.001G361700 [exp] 137 / 8e-35 AT1G50600 637 / 0.0 scarecrow-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family CL0063 [flax] [poplar] PF12041 [flax] [poplar] DELLA Transcriptional regulator DELLA protein N terminal
Representative CDS sequence Show only first row Show all	>Lus10028511 pacid=23166016 polypeptide=Lus10028511 locus=Lus10028511.g ID=Lus10028511.BGIv1.0 annot-version=v1.0 ATGAAAAGGGATCATCATCAGGCCAGCTGCGGTTACGGCGGCGGAAGAGTCGACGACTCTACTGCTGCTGCTGCTGCATCCGCATCAATGGCGGCTCCCC CAGCTGCAGGGAAAGGGAAGCTCTGGGAAGAAGACCAGGACGCCGGCGGGATGGATGAACTGCTTGCCGTTCTGGGTTACAAGGTCAGGGCTTCCGACAT GGCTGACGTGGCTCAGAAGCTCGAGCAGCTGGAGATGGTAATGGTGGCGGCGCAGGACGATGGGATTTCTCACCTCGCTTCCGATACTGTTCACTACAAC CCTTCCGATCTATCCGCCTGGTACGATAGTATGCTCTCGGAGCTCAACAACACGCCTTCTGTCCCGTTAGATTCCACTTCCTTGGTCTCCGGCGGCGCCG GAGGTTCTTCCTCCATGGATTTTTCCTCCGCCTCGCAGACCCACCAGTCTTCTTCTATCTTCAGAGACGACTCTGAGTACGATCTTAGGGCTATCCCTGG CGTTGCTGCTTTCCCACAAGCTGAATCTGAGAATGATAACAGCAGAAAGCGTATCAAAACTTCACACGGAGGTTCTTCTNNAACAAATTCCTCGAGCTCT AACACAGCTCCTTCGTCTTCTTCTTCCTCGTCTCCTTCAGTGGCGTTAACAGTCGAATCATCAACTCGTCCAGTTGTGATAGTCGACTCGCAGGAGGCCG GAGTCCGACTTGTCCACACCCTATTAGCCTGCGCCGAAGCGGTTCAGCAAGAAAACGTGAAGCTCGCCGACGCACTCGTCAAGCATACCGGACTGCTCGC GGCGTCTCAGACGGGATCCATGAGGAAAGTCGCTACCTACTTCGCCGAAGCTCTCGCTCGTCGTATTTACAAGATTTACCCTCAAGACTGTCTAGAACCT TCTTATTCGGACACCTTAGAGATGCACTTCTACGAGACTTGCCCTTACCTGAAATTCGCCCATTTCACTGCCAATCAAGCGATTCTGGAAGCGTTCGCGA CCGCCGATCGGGTTCATGTAATCGATTTCGGGCTCAAGCAAGGGATGCAGTGGCCGGCTCTGATGCAAGCTCTGGCAATACGGCCCCGTCGACCGCCCGC ATTTCGCTTTATACTACACCGGCCCCGTCTTCACAGCCAATCGGCAGGGATAGATAAAGTACTGTCGTCGATCAAGGCGATGAAGCCAAAGATCGTGACG GTTGTGGAGCAAGAAGCCAACCACAACGGGCCTGTGTTCGTGGACCGGTTCACGGAGGCTCTGCATTACTACTCCAGTCTGTTCGACTCGCTGGAAGGAT CGTCGCCGAGTCAGGATCTGGTGATGTCGGAGCTCTACCTCGGGAGGCAGATTTGCAACGTGGTTGCGTGCGAAGGAGGCGACCGAGTTGAACGGCACGA GACGTTGACTCAGTGGAGAGGCCGGATGGAATCAGCCGGGTTTGACCCGGTTCACCTGGGGTCGAACGCGTACAAGCAAGCTAGTATGTTACTTGCGCTC TTCGCCGGCGGGGACGGGTACAAGGTGGAGGAGAACGACGGGTCTCTGATGCTTGGGTGGCACACTAGACCTCTGATAGCCACGTCGGCATGGCAGCTTG CCAAGTGA
AA sequence Show only first row Show all	>Lus10028511 pacid=23166016 polypeptide=Lus10028511 locus=Lus10028511.g ID=Lus10028511.BGIv1.0 annot-version=v1.0 MKRDHHQASCGYGGGRVDDSTAAAAASASMAAPPAAGKGKLWEEDQDAGGMDELLAVLGYKVRASDMADVAQKLEQLEMVMVAAQDDGISHLASDTVHYN PSDLSAWYDSMLSELNNTPSVPLDSTSLVSGGAGGSSSMDFSSASQTHQSSSIFRDDSEYDLRAIPGVAAFPQAESENDNSRKRIKTSHGGSSXTNSSSS NTAPSSSSSSSPSVALTVESSTRPVVIVDSQEAGVRLVHTLLACAEAVQQENVKLADALVKHTGLLAASQTGSMRKVATYFAEALARRIYKIYPQDCLEP SYSDTLEMHFYETCPYLKFAHFTANQAILEAFATADRVHVIDFGLKQGMQWPALMQALAIRPRRPPAFRFILHRPRLHSQSAGIDKVLSSIKAMKPKIVT VVEQEANHNGPVFVDRFTEALHYYSSLFDSLEGSSPSQDLVMSELYLGRQICNVVACEGGDRVERHETLTQWRGRMESAGFDPVHLGSNAYKQASMLLAL FAGGDGYKVEENDGSLMLGWHTRPLIATSAWQLAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10028511 [exp]	0	1
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10009134 [exp]	1.0	0.8809
AT1G12310			Calcium-binding EF-hand family...		Lus10004332 [exp]	4.2	0.8746
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Lus10015226 [exp]	4.9	0.8535
					Lus10042355 [exp]	5.2	0.8696
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10025395 [exp]	6.3	0.8489
AT2G41640			Glycosyltransferase family 61 ...		Lus10018048 [exp]	8.0	0.8252
AT1G35780			unknown protein		Lus10020921 [exp]	12.0	0.8354
AT4G02580			NADH-ubiquinone oxidoreductase...		Lus10024851 [exp]	12.0	0.8125
AT3G26935			DHHC-type zinc finger family p...		Lus10035177 [exp]	16.1	0.8058
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10019000 [exp]	16.1	0.7983

Compare expression of checked genes

Lus10028511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.