Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66370 204 / 4e-65 MYB ATMYB113 myb domain protein 113 (.1) AT1G66380 183 / 4e-58 MYB ATMYB114 myb domain protein 114 (.1) AT1G56650 186 / 5e-58 MYB ATMYB75, SIAA1, PAP1 SUC-INDUCED ANTHOCYANIN ACCUMULATION 1, MYELOBLASTOSIS PROTEIN 75, MYB DOMAIN PROTEIN 75, production of anthocyanin pigment 1 (.1) AT1G66390 186 / 1e-57 MYB PAP2, AtMYB90 PRODUCTION OF ANTHOCYANIN PIGMENT 2, myb domain protein 90 (.1) AT3G13540 155 / 6e-46 MYB ATMYB5, ATM2 myb domain protein 5 (.1) AT4G38620 154 / 5e-45 MYB AtMYB4 myb domain protein 4 (.1) AT1G22640 153 / 5e-45 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT4G09460 149 / 1e-43 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT5G14750 148 / 1e-43 MYB WER1, WER, AtMYB66 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) AT2G16720 149 / 3e-43 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009130 [exp] 537 / 0 AT1G66370 202 / 3e-64 myb domain protein 113 (.1) Lus10028514 [exp] 225 / 8e-73 AT1G66370 179 / 1e-55 myb domain protein 113 (.1) Lus10009129 [exp] 210 / 8e-67 AT1G66370 179 / 2e-55 myb domain protein 113 (.1) Lus10042522 [exp] 182 / 3e-56 AT1G66370 181 / 7e-57 myb domain protein 113 (.1) Lus10003277 [exp] 165 / 1e-49 AT1G66370 160 / 2e-48 myb domain protein 113 (.1) Lus10000470 [exp] 163 / 2e-48 AT2G16720 196 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10033438 [exp] 160 / 4e-47 AT1G22640 194 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Lus10039173 [exp] 157 / 3e-46 AT3G13540 244 / 3e-81 myb domain protein 5 (.1) Lus10013762 [exp] 154 / 5e-45 AT3G13540 241 / 1e-79 myb domain protein 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G125700 [exp] 213 / 4e-68 AT1G66370 202 / 1e-64 myb domain protein 113 (.1) Potri.017G125900 [exp] 212 / 7e-68 AT1G66370 191 / 1e-60 myb domain protein 113 (.1) Potri.017G125600 [exp] 211 / 3e-67 AT1G66370 183 / 5e-57 myb domain protein 113 (.1) Potri.017G125800 [exp] 209 / 1e-66 AT1G66370 190 / 5e-60 myb domain protein 113 (.1) Potri.017G126000 [exp] 198 / 3e-62 AT1G66370 188 / 5e-59 myb domain protein 113 (.1) Potri.001G005100 [exp] 165 / 6e-49 AT3G13540 247 / 1e-81 myb domain protein 5 (.1) Potri.013G056500 [exp] 164 / 2e-48 AT3G13540 236 / 4e-77 myb domain protein 5 (.1) Potri.003G219900 [exp] 164 / 3e-48 AT3G13540 243 / 1e-79 myb domain protein 5 (.1) Potri.013G056400 [exp] 163 / 3e-48 AT3G13540 226 / 2e-73 myb domain protein 5 (.1) Potri.003G079100 [exp] 157 / 1e-47 AT3G13540 168 / 1e-52 myb domain protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10028513 pacid=23166080 polypeptide=Lus10028513 locus=Lus10028513.g ID=Lus10028513.BGIv1.0 annot-version=v1.0 ATGGAAGGAGAGATGCAGAGTAGTACTGTGGGATTGAGGAAAGGGGCTTGGACTGAAGAGGAGGATAGGCTGCTTCGCAAGTGCATTGCCTCCTTCGGTG AAGGCCGGTGGCATCAGGTCCCCCTCCGTGCAGGGCTAAATAGATGCAGAAAAAGTTGCAGGCTAAGGTGGTTGAACTACCTGAAGCCAAATATTAAAAG AGGAGAGTTCTCCGAAGATGAAGTCGACCTTATCACTAGACTCCACAAGCTATTGGGTAACAGGTGGTCGTTGATCGCCGGGCGGTTGCCTGGGAGAACG GCCAACGACGTGAAGAATTACTGGAACACCCACCAGAAGAAAAAGACGGTATCGTTTCAGTGCAACCCAAGCTATACTAATACCAACAAATCAGAGCAGT TCAAGAAAAATAATAATAATGCAAAACTGCAAATAACAAAAACCAACATCATCAAGCCACGACCTCGGACCTTCTCATCGAAAAGCTTCTTCTGGCCGGG GAAGAAAATTACCACAAAGCCTCAGAATCCTGTACTTATTATAAATAAGCCACGTAATGTTGATGATGACGTGTCAAAGAAGCGGTCATATCATCATATG CGTGGCAGCGGCGGAGAGAGCACGTGGGTTGACCAGCTGGAAAGGTTTCTGAACGACGGCGGCGTTGTTAATGACGACGATGGGTCGCCGGCGGCGGGGA TTAATGGCGGCCATGAAGTGGAAGTTATTAATCGAACTGGGCAGTTAATATGGTCGGATAATGACGAAGAGAAGAACGTCAATATGGGTGATATTGGGAC AACTACGATGTTTGATGGTCAGGAAGATCATAATCAAAGTTGCTGGAGTGATATTGATATTTGGAGTCTCCTCGGTGACCATCGTGGCATTTAG
AA sequence Show only first row Show all	>Lus10028513 pacid=23166080 polypeptide=Lus10028513 locus=Lus10028513.g ID=Lus10028513.BGIv1.0 annot-version=v1.0 MEGEMQSSTVGLRKGAWTEEEDRLLRKCIASFGEGRWHQVPLRAGLNRCRKSCRLRWLNYLKPNIKRGEFSEDEVDLITRLHKLLGNRWSLIAGRLPGRT ANDVKNYWNTHQKKKTVSFQCNPSYTNTNKSEQFKKNNNNAKLQITKTNIIKPRPRTFSSKSFFWPGKKITTKPQNPVLIINKPRNVDDDVSKKRSYHHM RGSGGESTWVDQLERFLNDGGVVNDDDGSPAAGINGGHEVEVINRTGQLIWSDNDEEKNVNMGDIGTTTMFDGQEDHNQSCWSDIDIWSLLGDHRGI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10028513 [exp]	0	1
AT4G03230			S-locus lectin protein kinase ...		Lus10033752 [exp]	2.2	0.8604
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10006555 [exp]	2.8	0.8499
AT3G44800			Meprin and TRAF (MATH) homolog...		Lus10013547 [exp]	7.2	0.8339
					Lus10025317 [exp]	7.4	0.7950
AT1G17930			Aminotransferase-like, plant m...		Lus10024265 [exp]	8.2	0.7096
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10002830 [exp]	9.9	0.7660
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022313 [exp]	10.0	0.7598
AT1G54730			Major facilitator superfamily ...		Lus10029964 [exp]	11.5	0.8446
					Lus10011739 [exp]	13.4	0.7591
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10028514 [exp]	20.9	0.7939

Compare expression of checked genes

Lus10028513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.