Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66370 177 / 1e-54 MYB ATMYB113 myb domain protein 113 (.1) AT1G66380 160 / 2e-49 MYB ATMYB114 myb domain protein 114 (.1) AT1G56650 162 / 4e-49 MYB ATMYB75, SIAA1, PAP1 SUC-INDUCED ANTHOCYANIN ACCUMULATION 1, MYELOBLASTOSIS PROTEIN 75, MYB DOMAIN PROTEIN 75, production of anthocyanin pigment 1 (.1) AT1G66390 158 / 2e-47 MYB PAP2, AtMYB90 PRODUCTION OF ANTHOCYANIN PIGMENT 2, myb domain protein 90 (.1) AT3G13540 145 / 4e-42 MYB ATMYB5, ATM2 myb domain protein 5 (.1) AT5G52600 140 / 5e-41 MYB AtMYB82 myb domain protein 82 (.1) AT5G40330 140 / 1e-40 MYB ATMYBRTF, ATMYB23 myb domain protein 23 (.1) AT5G14750 139 / 1e-40 MYB WER1, WER, AtMYB66 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) AT5G35550 140 / 2e-40 MYB ATTT2, TT2, AtMYB123 TRANSPARENT TESTA 2, MYB DOMAIN PROTEIN 123, Duplicated homeodomain-like superfamily protein (.1) AT3G02940 140 / 7e-40 MYB ATMYB107 myb domain protein 107 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009129 [exp] 415 / 1e-147 AT1G66370 179 / 2e-55 myb domain protein 113 (.1) Lus10009130 [exp] 233 / 5e-76 AT1G66370 202 / 3e-64 myb domain protein 113 (.1) Lus10028513 [exp] 228 / 8e-74 AT1G66370 205 / 3e-65 myb domain protein 113 (.1) Lus10042522 [exp] 168 / 4e-51 AT1G66370 181 / 7e-57 myb domain protein 113 (.1) Lus10033438 [exp] 153 / 1e-44 AT1G22640 194 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Lus10003277 [exp] 151 / 1e-44 AT1G66370 160 / 2e-48 myb domain protein 113 (.1) Lus10000470 [exp] 152 / 2e-44 AT2G16720 196 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10039173 [exp] 144 / 2e-41 AT3G13540 244 / 3e-81 myb domain protein 5 (.1) Lus10013762 [exp] 141 / 2e-40 AT3G13540 241 / 1e-79 myb domain protein 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G125700 [exp] 194 / 3e-61 AT1G66370 202 / 1e-64 myb domain protein 113 (.1) Potri.017G125900 [exp] 186 / 3e-58 AT1G66370 191 / 1e-60 myb domain protein 113 (.1) Potri.017G125800 [exp] 184 / 5e-57 AT1G66370 190 / 5e-60 myb domain protein 113 (.1) Potri.017G125600 [exp] 181 / 5e-56 AT1G66370 183 / 5e-57 myb domain protein 113 (.1) Potri.017G126000 [exp] 172 / 3e-52 AT1G66370 188 / 5e-59 myb domain protein 113 (.1) Potri.001G005100 [exp] 150 / 2e-43 AT3G13540 247 / 1e-81 myb domain protein 5 (.1) Potri.001G169600 [exp] 146 / 2e-43 AT5G14750 167 / 9e-53 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) Potri.003G219900 [exp] 150 / 3e-43 AT3G13540 243 / 1e-79 myb domain protein 5 (.1) Potri.003G079100 [exp] 145 / 4e-43 AT3G13540 168 / 1e-52 myb domain protein 5 (.1) Potri.006G221200 [exp] 144 / 1e-42 AT3G13540 169 / 6e-53 myb domain protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10028514 pacid=23166151 polypeptide=Lus10028514 locus=Lus10028514.g ID=Lus10028514.BGIv1.0 annot-version=v1.0 ATGGAATTAGAAGCAGGGTTACGGAGAGGAACATGGGGTGAAGAGGAGGATAGGCTGCTCCGGAGGTGCATTCACACTTATGGAGAAGGAAGATGGCATC TCGTTCCCGCCCGAGCAGGATTGAATAGATGCAGGAAAAGTTGTAGACTGAGGTGGCTGAATTACTTGAAGCCAAACATCAAAAGAGGAGAGTTTGAAGG AGCTGAAGTTGATCTACTCATTAGGTTGCACAAGCTTTTGGGTAACAGATGGTCGCTAATCGCCGGGCGTTTGCCGGGAAGGACGGCCAACGACGTGAAA AACTATTGGAACACCCACCACAGGGAGAAGGAGAAGAAGAAACTAACCACCATCACGACGTCGTCCTCCATGCCTGCGGCTGCGTTGACTTTTCCATGCA AAAGACAGCGACATTGTACGGAACCACCGGTGGTCATCGTGGAAAAAGGAAAGATAACAAAGACCAACATCATAAGACCGAGGCCTGTGGGCTTGCCCAA AGGATTCTGTTGGCGGGCCGAAACAAATAAGCAGGCCCAGAGCCGATGTGTTGCTGCTGGTGATATTAACGGCGGCGGAAGTAGTACCGTTTGGGCACAA GAACTGAAGAGGTTTTTGGAGGATGACGTGGATAAATTCCCAGCAGCCACCTGCAACAAAATGACAGAACATGATAATAGTAGTTGTAGTAATGATGAGA TTATGAAGTTGGGTGTCGAGGGTTTGACGATGTTTGACCGTCAGGAGGAAGGCAATCATCAAAGTTGTTGGGGGGATGATGATGTAAGCATTTGGGAGCT CCTTCAGCGATCATCTTGA
AA sequence Show only first row Show all	>Lus10028514 pacid=23166151 polypeptide=Lus10028514 locus=Lus10028514.g ID=Lus10028514.BGIv1.0 annot-version=v1.0 MELEAGLRRGTWGEEEDRLLRRCIHTYGEGRWHLVPARAGLNRCRKSCRLRWLNYLKPNIKRGEFEGAEVDLLIRLHKLLGNRWSLIAGRLPGRTANDVK NYWNTHHREKEKKKLTTITTSSSMPAAALTFPCKRQRHCTEPPVVIVEKGKITKTNIIRPRPVGLPKGFCWRAETNKQAQSRCVAAGDINGGGSSTVWAQ ELKRFLEDDVDKFPAATCNKMTEHDNSSCSNDEIMKLGVEGLTMFDRQEEGNHQSCWGDDDVSIWELLQRSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10028514 [exp]	0	1
AT2G19860		ATHXK2	ARABIDOPSIS THALIANA HEXOKINAS...		Lus10034980 [exp]	1.0	0.9400
					Lus10007128 [exp]	4.0	0.9008
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10015190 [exp]	4.2	0.9307
					Lus10041636 [exp]	5.1	0.9333
					Lus10038619 [exp]	6.0	0.8709
AT4G15020			hAT transposon superfamily (.1...		Lus10002709 [exp]	6.0	0.8396
					Lus10000169 [exp]	6.2	0.8687
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10039721 [exp]	9.3	0.8270
					Lus10007080 [exp]	10.3	0.7688
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10031387 [exp]	10.8	0.8062

Compare expression of checked genes

Lus10028514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.