Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27760 525 / 0 FEY3, FEY FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G53090 520 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G53100 459 / 3e-162 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23430 130 / 9e-35 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G23420 128 / 6e-34 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G64590 120 / 1e-30 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G11410 119 / 2e-30 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G37540 112 / 8e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G24050 108 / 2e-26 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G15940 108 / 3e-26 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009112 [exp] 696 / 0 AT4G27760 510 / 0.0 FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035480 [exp] 130 / 1e-34 AT4G11410 444 / 5e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035479 [exp] 131 / 2e-34 AT4G11410 444 / 2e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10031101 [exp] 129 / 4e-34 AT4G23430 478 / 1e-171 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10035481 [exp] 128 / 8e-34 AT4G23430 479 / 6e-172 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10024647 [exp] 122 / 1e-31 AT4G11410 461 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024685 [exp] 122 / 1e-31 AT4G23430 431 / 4e-152 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10024648 [exp] 120 / 1e-30 AT4G23430 447 / 2e-159 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10031100 [exp] 118 / 4e-30 AT4G11410 409 / 1e-144 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G028900 [exp] 564 / 0 AT4G27760 553 / 0.0 FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G182000 [exp] 455 / 2e-160 AT4G27760 432 / 1e-151 FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G143600 [exp] 128 / 1e-33 AT4G23430 401 / 2e-140 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.003G128800 [exp] 127 / 1e-33 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G083900 [exp] 120 / 8e-31 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G146600 [exp] 119 / 2e-30 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.003G128700 [exp] 118 / 3e-30 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G103000 [exp] 115 / 5e-29 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G453500 [exp] 110 / 9e-27 AT5G15940 405 / 5e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G086900 [exp] 105 / 2e-25 AT4G24050 441 / 2e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10028534 pacid=23165964 polypeptide=Lus10028534 locus=Lus10028534.g ID=Lus10028534.BGIv1.0 annot-version=v1.0 ATGTCGCCGTCGTCTCCCTCTTCATCTTCGTCTTCTCCGCCGTCTCCCTCCGCTTATAGCTCGTCGCCTTTGAAAGGGGAAGACAGGACTAAGCAGGGGT TAGGATGGATAGAGTGGCTAAGGGGGTGGATGTACGTGATATACGAGATCCTCTTTCAGAGAATCTTGGCCAGTCACTTGCTGAATCCTATGCCTCTGCC TCCTATTAACGACCTCACTTGCATCGTCACCGGATCCACCAGCGGCATCGGTCGCGAAACCGCCAGGCAACTAGCGGAGGCGGGAGCGCACGTTGTAATG GCCGTTAGGAATGTTAAGGCGGGCACCGAGTTGATCCAGAAATGGCAGACTGATTGGGCAGGGCAAGGCCTCCCGCTCAACATCGAGGTGATGGAACTTG ATCTTCTCTCGTTGGAATCGGTTGTTAAGTTTGCTGAAGCCTGGAACGCTCATTCACGGCCTCTCAATGTCCTTATCAACAATGCTGGCATTTTTTCCAT TGGAGAATCACAAAGGTTTTCAAAAGATGGATATGAAGAACACATGCAAGTGAATCATCTCGCTCCAGCGTTACTATCAATATTACTATTGCCATCCCTA ATTAGAGGCACTCCTAGTAGGATTGTCAATGTGAATTCAGTGATGCACTATATTGGCTATTGTGACACAGAAGATTTGAATGTTACTTCTGGGAAGAGAA AATACACAAGCCTCGTGGGATATACCAGCAGCAAGTTAGCACAGGTAATGTTTAGTAATATTCTCCATAAGCGCTTGCCTGGTGAAGCTGGTATAAACGT CGTGTGTGCTGATCCCGGAATAGTCCATACAAATGTTGCTAGGGATCTTCCGAGAATCCTGCAAACCGGATATAATCTAATACCGTATTTCATCTTCAGT CCCGAGGAAGGTTCCCGCAGTGCACTTTTTGCAGCCACAGATCCTCAGATGTCAGAATACTGTGAACTGCTGAAAGCAGAGGACCATCCCGCCTGTGCAT TTATCTCCCAAGATTGTCGACCAGCAAGCCCTTCAGAAGAAGCACACAGAACTGAGCAATCACATAAACTGTGGGAGAAGACACTAGAGCTAGTTGGTCT TCCAACAGACGCTGTGGAGAGGCTTCTCCAAGGGGAAGAAGTCGTATGCCGATATGCGAATCATAACAAGGAGGAATAG
AA sequence Show only first row Show all	>Lus10028534 pacid=23165964 polypeptide=Lus10028534 locus=Lus10028534.g ID=Lus10028534.BGIv1.0 annot-version=v1.0 MSPSSPSSSSSSPPSPSAYSSSPLKGEDRTKQGLGWIEWLRGWMYVIYEILFQRILASHLLNPMPLPPINDLTCIVTGSTSGIGRETARQLAEAGAHVVM AVRNVKAGTELIQKWQTDWAGQGLPLNIEVMELDLLSLESVVKFAEAWNAHSRPLNVLINNAGIFSIGESQRFSKDGYEEHMQVNHLAPALLSILLLPSL IRGTPSRIVNVNSVMHYIGYCDTEDLNVTSGKRKYTSLVGYTSSKLAQVMFSNILHKRLPGEAGINVVCADPGIVHTNVARDLPRILQTGYNLIPYFIFS PEEGSRSALFAATDPQMSEYCELLKAEDHPACAFISQDCRPASPSEEAHRTEQSHKLWEKTLELVGLPTDAVERLLQGEEVVCRYANHNKEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Lus10028534 [exp]	0	1
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10037653 [exp]	1.7	0.9059
AT3G66658		ALDH22A1	aldehyde dehydrogenase 22A1 (....		Lus10037763 [exp]	4.1	0.9252
AT1G16900			Alg9-like mannosyltransferase ...		Lus10028153 [exp]	9.2	0.8875
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10035723 [exp]	15.0	0.9070
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10038008 [exp]	15.3	0.8991
AT1G75590			SAUR-like auxin-responsive pro...		Lus10012426 [exp]	15.9	0.8897
AT3G62310			RNA helicase family protein (....		Lus10005261 [exp]	16.9	0.8895
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Lus10021126 [exp]	19.4	0.8954
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10013788 [exp]	21.6	0.9047
AT4G22010		SKS4	SKU5 similar 4 (.1)		Lus10015545 [exp]	23.2	0.9027

Compare expression of checked genes

Lus10028534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.