Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15960 540 / 0 ATNRAMP6, NRAMP6 NRAMP metal ion transporter 6 (.1) AT1G80830 535 / 0 ATNRAMP1, PMIT1, NRAMP1 natural resistance-associated macrophage protein 1 (.1) AT5G67330 299 / 4e-95 ATNRAMP4 ARABIDOPSIS THALIANA NATURAL RESISTANCE ASSOCIATED MACROPHAGE PROTEIN 4, natural resistance associated macrophage protein 4 (.1) AT2G23150 298 / 1e-94 ATNRAMP3, NRAMP3 natural resistance-associated macrophage protein 3 (.1) AT4G18790 298 / 1e-94 ATNRAMP5, NRAMP5 NRAMP metal ion transporter family protein (.1) AT1G47240 296 / 5e-94 ATNRAMP2, NRAMP2 NRAMP metal ion transporter 2 (.1) AT5G03280 119 / 8e-28 CKR1, PIR2, ORE3, ORE2, ERA3, EIN2, ATEIN2 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018132 [exp] 943 / 0 AT1G15960 623 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10024069 [exp] 536 / 0 AT1G15960 822 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10041652 [exp] 534 / 0 AT1G15960 826 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10014868 [exp] 301 / 5e-96 AT1G47240 763 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10010395 [exp] 301 / 8e-96 AT1G47240 759 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10032853 [exp] 295 / 4e-93 AT1G47240 793 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10004317 [exp] 294 / 6e-93 AT1G47240 793 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10013803 [exp] 112 / 2e-25 AT5G03280 627 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Lus10026517 [exp] 111 / 3e-25 AT5G03280 1057 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G181000 [exp] 748 / 0 AT1G80830 571 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.005G181100 [exp] 739 / 0 AT1G80830 550 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.002G080400 [exp] 733 / 0 AT1G80830 546 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.002G080500 [exp] 725 / 0 AT1G80830 590 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.001G044900 [exp] 536 / 0 AT1G15960 744 / 0.0 NRAMP metal ion transporter 6 (.1) Potri.007G050600 [exp] 301 / 6e-96 AT2G23150 765 / 0.0 natural resistance-associated macrophage protein 3 (.1) Potri.007G050700 [exp] 297 / 1e-94 AT2G23150 768 / 0.0 natural resistance-associated macrophage protein 3 (.1) Potri.002G121000 [exp] 289 / 5e-91 AT1G47240 790 / 0.0 NRAMP metal ion transporter 2 (.1) Potri.006G127100 [exp] 140 / 9e-35 AT5G03280 1261 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Potri.016G090800 [exp] 132 / 5e-32 AT5G03280 1348 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01566 [flax] [poplar] Nramp Natural resistance-associated macrophage protein
Representative CDS sequence Show only first row Show all	>Lus10028542 pacid=23164624 polypeptide=Lus10028542 locus=Lus10028542.g ID=Lus10028542.BGIv1.0 annot-version=v1.0 ATGGCTCACCAAATTCTATCTTCCGACGCCGGCCATCCGAGCAACCGTGTCACCGCCGTCAACGTCACCCCTTCCCCTCCCCACTTTTCCTCCGGCAACG GTGGCGCCCCTCTCACTTCCTCCTCCGACTCCGACGACCAACAGCCTGGATGGAAGAAGTTTATGAAATGTATTGGGCCTGGATTCCTCGTCTCGTTAGC CTATCTCGACCCTGGAAACTTGGAAACCGATTTGCAGGCAGGTGCTAACCATGGTTACGAGCTGCTCTGGATTATACTAATCGGGTTGATTTTCGCTCTA ATCATCCAATCTCTCGCGGCCAATCTCGGAGTCAGTACCGGGAAACACTTATCGGAATTATGCAAGGCTGAGTACCCGCCATTTGTGAGGATATGTCTTT GGCTGCTGGCTGAACTCGCTGTCATTGCTGCCGACATACCCGAAGTGATAGGTACAGCTTTTGCTCTCAACATATTGTTTCACATCCCAGTTTGGGCCGG CGTCTTGTTAACTGGGAGCAGCACTTTGTTACTACTTGGCCTGCAGAAATATGGGGTAAGGAAGCTGGAGATGTTGATATCGGTGTTGGTATTCGTAATG GCAGCTTGCTTCTTCGGCGAAATGAGTTATGTCAAGCCGCCGGCGAATGATGTTCTCAAAGGCATGTTTATCCCAAAACTTGCCGGCCAAAGTGCCACCG GCGACGCCATTGCCCTCCTCGGCGCCCTCATCATGCCGCACAATCTGTTTCTCCACTCGGCTCTAGTCCTTTCCCGGAAAGTCCCAAACTCTGTCCGTGG AGTCAATGATGTTTGCCGATATTTCCTAATCGAGAGCGGATTCGCACTGTTCGTAGCGTTCCTGATCAACGTATCGGTCATCTCTGTTTCCGGCAAGGTA TGCTCGGCAAGTGACATCTCGCCGGAGAATGCAGAACGTTGTAGCGACCTCACTCTCAACTCTGCTTCTTTCCTTCTTAAGAATGTGTTGGGAAGATCGA GCAAGATCCTATATGGGGTAGCATTGTTAGCTTCAGGGCAGAGTTCAGCAATCACAGGGACGTATGCAGGGCAGTTCATAATGCAAGGGTTCTTGGATCT CAAGATGAGACCTTGGTTGAGGAACCTCATTACACGGTCTATCGCCATCACTCCTAGCCTCATCGTCGCCATCATCGGAGGATCTGCTGGTGCCGGTAGA CTCATCATCATCGCTTCGATGATACTATCATTCGAGCTGCCATTTTCACTCATCCCACTTCTGAAATTCAGCAGCAGCAAAACCAAGATGGGACCTTACA AGAACTCCATTTATACCATCGTTGTATCGTGGGTTCTCGGGCTAGGAATCATTGGCATCAACGTCTACTACCTAACGACCGGGTTCGTGGGTTGGTTAGT GGACAGTGACCTCCACAAAGTTGGGAAAGTGTTCATAGGGATCCTGGTCTTCCCACTCATGGCAGTCTATGTTCTTGCCGTCATCTACCTAACGTTCAGG AAGGATGTCGTCGAGACTTACATCGAGCCGGTTAAGAACCAGTCAGCGGCCGAACAAGGGCTCACAGAGGCCAGTGACGACCGGTTGCATTACAGGGAGG ACTTGGCCAGTATTCCGTTGCCTAAATAA
AA sequence Show only first row Show all	>Lus10028542 pacid=23164624 polypeptide=Lus10028542 locus=Lus10028542.g ID=Lus10028542.BGIv1.0 annot-version=v1.0 MAHQILSSDAGHPSNRVTAVNVTPSPPHFSSGNGGAPLTSSSDSDDQQPGWKKFMKCIGPGFLVSLAYLDPGNLETDLQAGANHGYELLWIILIGLIFAL IIQSLAANLGVSTGKHLSELCKAEYPPFVRICLWLLAELAVIAADIPEVIGTAFALNILFHIPVWAGVLLTGSSTLLLLGLQKYGVRKLEMLISVLVFVM AACFFGEMSYVKPPANDVLKGMFIPKLAGQSATGDAIALLGALIMPHNLFLHSALVLSRKVPNSVRGVNDVCRYFLIESGFALFVAFLINVSVISVSGKV CSASDISPENAERCSDLTLNSASFLLKNVLGRSSKILYGVALLASGQSSAITGTYAGQFIMQGFLDLKMRPWLRNLITRSIAITPSLIVAIIGGSAGAGR LIIIASMILSFELPFSLIPLLKFSSSKTKMGPYKNSIYTIVVSWVLGLGIIGINVYYLTTGFVGWLVDSDLHKVGKVFIGILVFPLMAVYVLAVIYLTFR KDVVETYIEPVKNQSAAEQGLTEASDDRLHYREDLASIPLPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15960		ATNRAMP6, NRAMP...	NRAMP metal ion transporter 6 ...		Lus10028542 [exp]	0	1
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10008291 [exp]	11.3	0.9126
AT3G01430			unknown protein		Lus10014527 [exp]	22.4	0.9064
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Lus10041711 [exp]	28.9	0.8931
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Lus10028173 [exp]	30.9	0.8893
AT5G38200			Class I glutamine amidotransfe...		Lus10035996 [exp]	31.7	0.8549
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10016204 [exp]	35.2	0.8855
AT3G14260			Protein of unknown function (D...		Lus10001484 [exp]	40.6	0.8928
AT5G14890			NHL domain-containing protein ...		Lus10032160 [exp]	47.2	0.8755
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10018500 [exp]	47.4	0.8637
AT1G49570			Peroxidase superfamily protein...		Lus10009901 [exp]	47.4	0.8762

Compare expression of checked genes

Lus10028542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.