Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77380 526 / 0 AAP3, ATAAP3 amino acid permease 3 (.1) AT5G09220 502 / 7e-177 AAP2 amino acid permease 2 (.1) AT5G63850 487 / 2e-171 AAP4 amino acid permease 4 (.1) AT1G44100 485 / 3e-170 AAP5 amino acid permease 5 (.1) AT1G58360 401 / 4e-137 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT5G49630 397 / 1e-135 AAP6 amino acid permease 6 (.1) AT1G10010 388 / 2e-132 AAP8, ATAAP8 amino acid permease 8 (.1) AT5G23810 321 / 3e-106 AAP7 amino acid permease 7 (.1.2) AT1G48640 127 / 2e-32 Transmembrane amino acid transporter family protein (.1) AT5G40780 122 / 1e-30 LHT1, LTH1 lysine histidine transporter 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018852 [exp] 672 / 0 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10029702 [exp] 554 / 0 AT1G77380 706 / 0.0 amino acid permease 3 (.1) Lus10042740 [exp] 548 / 0 AT1G77380 698 / 0.0 amino acid permease 3 (.1) Lus10037150 [exp] 542 / 0 AT1G77380 680 / 0.0 amino acid permease 3 (.1) Lus10036777 [exp] 538 / 0 AT1G77380 684 / 0.0 amino acid permease 3 (.1) Lus10042744 [exp] 536 / 0 AT1G77380 667 / 0.0 amino acid permease 3 (.1) Lus10029707 [exp] 535 / 0 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10029703 [exp] 498 / 3e-175 AT1G44100 688 / 0.0 amino acid permease 5 (.1) Lus10028236 [exp] 408 / 8e-140 AT5G49630 687 / 0.0 amino acid permease 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G079400 [exp] 552 / 0 AT1G77380 765 / 0.0 amino acid permease 3 (.1) Potri.002G079500 [exp] 547 / 0 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.005G181500 [exp] 544 / 0 AT1G77380 728 / 0.0 amino acid permease 3 (.1) Potri.005G181600 [exp] 543 / 0 AT1G77380 746 / 0.0 amino acid permease 3 (.1) Potri.002G080066 [exp] 538 / 0 AT1G77380 751 / 0.0 amino acid permease 3 (.1) Potri.002G079700 [exp] 531 / 0 AT1G77380 756 / 0.0 amino acid permease 3 (.1) Potri.007G100100 [exp] 523 / 0 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.005G068900 [exp] 520 / 0 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.009G133600 [exp] 491 / 2e-172 AT5G09220 711 / 0.0 amino acid permease 2 (.1) Potri.002G112100 [exp] 420 / 2e-144 AT5G49630 691 / 0.0 amino acid permease 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10028546 pacid=23164497 polypeptide=Lus10028546 locus=Lus10028546.g ID=Lus10028546.BGIv1.0 annot-version=v1.0 ATGGTGGCTGACAACGGCGAACTCCCTTACCTCCACCACGAACACGCCGCCCTCGACATCTCCATGGACACCGCCTCCCACATGGCTGGAAAGTGCTTCG ACGACGACGGCCGCCCCAAACGAACTGGTGGCTTCTATGTGAAGGTTTGTGGATATGTTCAGTACATTAATCTGTTCGGTGTAGCAATCGGCTACACAAT TGCTTCTTCCATTAGTATGATGGCGGTGAAGAGGTCGAACTGTTTCCACCGGAGCCACGGCACCGATCCGTGCCACATGAACGCGAATCCGTACATGGTG GCGTTCGGAGTGGCGGAGATACTTCTGTCGCAGATCCCGGACTTCGATCAGCTGTCGTGGCTTTCGATCGTGGCTGCGGTGATGTCATTCACTTACTCCT CGATCGGACTGGGACTCGGAATCGGGAAAGTGATCGGGAACAAGGAAATTAAAGGGAGTCTCACCGGAATTGGGCTCGACGTCGTTACTCCGACCGACAA GGTGTGGAGGAGCTTCCAGGCACTCGGTGGAATCGCCTTTGCTTACTCCTTCTCCAACATCTTGATTGAAATTCAGGACACGATCAAATCGCCGCCGTCG GAATCAAAGACGATGAAGAAAGCATCCTTAATCAGCATCTCCGTAACAACCTTCTTCTACATGCTCTGCGGCTGCTTCGGCTACGCAGCCTTCGGCGACT CATCCCCAGGAAACCTCCTAACCGGTTTTGGATTCTACAACCCGTACTGGCTGCTCGACATCGCCAACGTCGCCATAGTCATCCACCTCGTCGGAGCATA CCAAGTCTTCTGCCAGCCCATCTACGCATTCGTCGAGAAGATCGCCAAGAACAAGTTCCCCGACAGCACCTTCATCACCAAGGAAATCCGTATCGGAAGT TACAATCTCAACCTGTTCCGGCTGGTCTGGAGGACACTCTTCGTGATCACCACCACCGTGATCTCGATGATGCTCCCTTTCTTCAACTCCATCGTCGGAC TCCTGGGAGCGTTCGGATTCTGGCCGCTGACCGTTTTCTTCCCAGTGGAGATGTACATTTCTCAGAAGAAGATCCCCAAGTGGAGCACGAGGTGGGTCTC GCTCGAGATCTTGAGCGTCGCATGCTTGATTATATCAATCTGCGCCGCGGCTGGGTCGATAGCTGAGATCGTAGAGGATTTGAAGTCTGTGAAGCTATTC CACATGAAATACTAA
AA sequence Show only first row Show all	>Lus10028546 pacid=23164497 polypeptide=Lus10028546 locus=Lus10028546.g ID=Lus10028546.BGIv1.0 annot-version=v1.0 MVADNGELPYLHHEHAALDISMDTASHMAGKCFDDDGRPKRTGGFYVKVCGYVQYINLFGVAIGYTIASSISMMAVKRSNCFHRSHGTDPCHMNANPYMV AFGVAEILLSQIPDFDQLSWLSIVAAVMSFTYSSIGLGLGIGKVIGNKEIKGSLTGIGLDVVTPTDKVWRSFQALGGIAFAYSFSNILIEIQDTIKSPPS ESKTMKKASLISISVTTFFYMLCGCFGYAAFGDSSPGNLLTGFGFYNPYWLLDIANVAIVIHLVGAYQVFCQPIYAFVEKIAKNKFPDSTFITKEIRIGS YNLNLFRLVWRTLFVITTTVISMMLPFFNSIVGLLGAFGFWPLTVFFPVEMYISQKKIPKWSTRWVSLEILSVACLIISICAAAGSIAEIVEDLKSVKLF HMKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10028546 [exp]	0	1
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10043350 [exp]	1.4	0.8177
AT3G15810			Protein of unknown function (D...		Lus10038097 [exp]	4.2	0.7793
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10028445 [exp]	4.9	0.7960
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10018852 [exp]	6.0	0.8286
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10021892 [exp]	10.0	0.7017
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Lus10027990 [exp]	11.4	0.6957
AT3G10300			Calcium-binding EF-hand family...		Lus10035435 [exp]	11.5	0.8039
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10042874 [exp]	14.1	0.7547
AT4G24050			NAD(P)-binding Rossmann-fold s...		Lus10017308 [exp]	15.9	0.6805
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10008714 [exp]	17.9	0.7321

Compare expression of checked genes

Lus10028546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.