Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01170 381 / 8e-127 BAT1 bidirectional amino acid transporter 1 (.1.2) AT2G34960 48 / 2e-05 CAT5 cationic amino acid transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039616 [exp] 788 / 0 AT2G01170 401 / 5e-135 bidirectional amino acid transporter 1 (.1.2) Lus10034628 [exp] 427 / 3e-142 AT2G01170 776 / 0.0 bidirectional amino acid transporter 1 (.1.2) Lus10035260 [exp] 366 / 6e-122 AT2G01170 667 / 0.0 bidirectional amino acid transporter 1 (.1.2) Lus10029533 [exp] 208 / 8e-62 AT2G01170 133 / 2e-34 bidirectional amino acid transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G078100 [exp] 884 / 0 AT2G01170 370 / 5e-123 bidirectional amino acid transporter 1 (.1.2) Potri.007G100700 [exp] 806 / 0 AT2G01170 398 / 7e-134 bidirectional amino acid transporter 1 (.1.2) Potri.002G078300 [exp] 650 / 0 AT2G01170 268 / 2e-86 bidirectional amino acid transporter 1 (.1.2) Potri.002G078501 [exp] 558 / 0 AT2G01170 241 / 1e-74 bidirectional amino acid transporter 1 (.1.2) Potri.008G125100 [exp] 442 / 3e-150 AT2G01170 747 / 0.0 bidirectional amino acid transporter 1 (.1.2) Potri.010G119100 [exp] 440 / 8e-150 AT2G01170 754 / 0.0 bidirectional amino acid transporter 1 (.1.2) Potri.003G154600 [exp] 44 / 0.0002 AT2G34960 870 / 0.0 cationic amino acid transporter 5 (.1) Potri.001G378500 [exp] 44 / 0.0002 AT1G17120 785 / 0.0 cationic amino acid transporter 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00324 [flax] [poplar] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Lus10028561 pacid=23164638 polypeptide=Lus10028561 locus=Lus10028561.g ID=Lus10028561.BGIv1.0 annot-version=v1.0 ATGAGTTTCAGAGAAGGAAATGGACTTGGCGGCTCGAAAAGAGTGGCGGCCATGGAACTCGAGATCGAACCGGATGATAACCGATCGGATGGAGGGTTGT TCAAGGCCATGGATTCCGGTGAAAAGCGGCTCAATGAGCTTGGTTACAAGCAGGAGCTCCGAAGAGAAATGACGTTTGTGAAGATACTGGGGATAACGTT TTCGAGCATGGCGGTGTTCGTAGGGACGCCGCTGTACGGAGCGAGCTTGAGGTACGCCGGACCGGCGAGCTTGATATGGGGGTGGCCGGTGGTGGTTTTC TTCACTTGGTTCGTCGGAGTTGCCATGTCTGAGATCTGCTCTTCTTTCCCTACTACAGGATCACTCTACTTTTGGGCGGCACACTTGGCCGGACCACGAT GGGGACCGTTCGCGTCCTGGTGTTGCGCCTGGCTCGAGACCATAGGTCTCGTTTCCGGAATCGGTGCTCAGGCATACTCGGTCTCTCAATCGCTACAAAT GATAATCCTAGTAGCGACTGGAACCAACAAAGGAGGAGGCTATTTCGCTTCAAGAGGAGTGTTCCTATCGATGTACATCGGGTTCACCTTAATTTGGGCA ATCCTCAACACTTTTGCTCTTGAAGTCATTGCTTTCTTGGGCATCATCTCCATGTGGTGGCAGGTGATCGGAGGTATAGTGGTGATCATAATGCTGCCGC TGGTGGCACAGAGCACCCAATCGGCATCGTTCGTGTTCACACACTTCGAGACGGACCCCGAGGCCACCGGAATCAGCAGCAAGCCTTACGCAATCATATT GTCTGTATTGTTGAGCAATTACTGCCTCTACGGCTACGATACGGCAGCCCATTTGACCGAGGAGACCAAGAACGCCGATAGAAGTGGGCCCTTCGCAATC CTCTCCAGTATTGGGCTCATTTCTGTTTTTGGATGGGCCTATAATTTGGCCCTCACTTTCAGTATTCAGGATTTCAACTATCTGTATGACGAGAACAATG AGACTGGAGGTGTGTCAGTGCCTGCACAGATCATCTACGACGCTTTCCATGGCAGATACCATAACTCCACTGGAGCGGTTGTTTTCCTCTGCATCATCTG GGGATCTTTCTTCTTCTGTGGCCTCGCTGTTACGGCCAGTGCCGCCAGAGTGGTATATGCACTGTCAAGAGACAACGGCATCCCATTCTCATCAACATGG AGAACCCTACACCCCAGGACTAAAGTCCCAGCAAATGCAGTGTGGCTATGTGCAGGAATCTCCATCATCCTAGGGCTACCGATCTTGAAGCTCGATGTCG TTTTCACAGCCATACTGTCGATCAGCACCGTCGGATGGGTTGGAGGGTACGCGGTACCTATCTTCTGCAGGCTCGTTATGGACGAGAAGAACTTCAAGCC GGGACCTTTCTACTTAGGGAGAGCCAGAAGACCAGTCTGCCTGGTTGCGTTTTTATGGATAGGCTACACTTGTTCGGCGTTTCTGTTGCCTACTACTTAC CCGATTCAGCTCAAGAACTTCAACTATTCTCCGATCGCCCTATCGGTTTGCCTCGGGTTGGTTATGCTTTGGTGGGTTTTGGATGCTAGGAAGTGGTTCA AGGGTCCTGTTAGGAATATTGAGGTGGTCAACGGCACTAACGGCCAACCTTGTTAG
AA sequence Show only first row Show all	>Lus10028561 pacid=23164638 polypeptide=Lus10028561 locus=Lus10028561.g ID=Lus10028561.BGIv1.0 annot-version=v1.0 MSFREGNGLGGSKRVAAMELEIEPDDNRSDGGLFKAMDSGEKRLNELGYKQELRREMTFVKILGITFSSMAVFVGTPLYGASLRYAGPASLIWGWPVVVF FTWFVGVAMSEICSSFPTTGSLYFWAAHLAGPRWGPFASWCCAWLETIGLVSGIGAQAYSVSQSLQMIILVATGTNKGGGYFASRGVFLSMYIGFTLIWA ILNTFALEVIAFLGIISMWWQVIGGIVVIIMLPLVAQSTQSASFVFTHFETDPEATGISSKPYAIILSVLLSNYCLYGYDTAAHLTEETKNADRSGPFAI LSSIGLISVFGWAYNLALTFSIQDFNYLYDENNETGGVSVPAQIIYDAFHGRYHNSTGAVVFLCIIWGSFFFCGLAVTASAARVVYALSRDNGIPFSSTW RTLHPRTKVPANAVWLCAGISIILGLPILKLDVVFTAILSISTVGWVGGYAVPIFCRLVMDEKNFKPGPFYLGRARRPVCLVAFLWIGYTCSAFLLPTTY PIQLKNFNYSPIALSVCLGLVMLWWVLDARKWFKGPVRNIEVVNGTNGQPC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10028561 [exp]	0	1
					Lus10025850 [exp]	1.4	0.8062
AT3G47570			Leucine-rich repeat protein ki...		Lus10035726 [exp]	8.4	0.7663
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10038639 [exp]	8.5	0.7776
AT4G18360			Aldolase-type TIM barrel famil...		Lus10042495 [exp]	9.8	0.7650
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10002621 [exp]	9.8	0.7102
AT3G47570			Leucine-rich repeat protein ki...		Lus10030856 [exp]	13.0	0.7607
AT5G17390			Adenine nucleotide alpha hydro...		Lus10007982 [exp]	13.7	0.7495
AT4G27300			S-locus lectin protein kinase ...		Lus10016864 [exp]	14.9	0.7487
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10033519 [exp]	18.3	0.7491
					Lus10014629 [exp]	19.7	0.7482

Compare expression of checked genes

Lus10028561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.