Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17950 194 / 3e-61 MYB AtMYB52, BW52, MYB52 myb domain protein 52 (.1) AT1G69560 192 / 4e-59 MYB LOF2, ATMYB105 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) AT1G26780 189 / 7e-59 MYB LOF1, ATMYB117 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2) AT1G73410 184 / 4e-57 MYB AtMYB54, BW54, MYB54 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 54, myb domain protein 54 (.1) AT4G33450 179 / 5e-55 MYB ATMYB69 myb domain protein 69 (.1) AT5G17800 179 / 2e-54 MYB ATMYB56 myb domain protein 56 (.1) AT3G29020 170 / 6e-52 MYB ATMYB110 myb domain protein 110 (.1.2) AT5G39700 132 / 8e-38 MYB ATMYB89 myb domain protein 89 (.1) AT5G67300 133 / 7e-37 MYB ATMYB44, AtMYBr1 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) AT3G50060 132 / 1e-36 MYB ATMYB77 myb domain protein 77 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018936 [exp] 382 / 1e-134 AT1G69560 206 / 6e-65 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10029746 [exp] 209 / 3e-66 AT1G17950 199 / 1e-62 myb domain protein 52 (.1) Lus10031900 [exp] 193 / 2e-59 AT1G17950 220 / 2e-70 myb domain protein 52 (.1) Lus10031326 [exp] 192 / 3e-59 AT1G17950 219 / 3e-70 myb domain protein 52 (.1) Lus10030452 [exp] 191 / 4e-58 AT1G69560 240 / 6e-77 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10026611 [exp] 190 / 8e-58 AT1G69560 238 / 5e-76 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10005683 [exp] 181 / 5e-55 AT5G17800 212 / 1e-66 myb domain protein 56 (.1) Lus10040239 [exp] 144 / 3e-40 AT3G55730 315 / 1e-104 myb domain protein 109 (.1) Lus10028250 [exp] 143 / 1e-39 AT3G55730 306 / 2e-101 myb domain protein 109 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G186400 [exp] 209 / 5e-66 AT1G17950 197 / 1e-61 myb domain protein 52 (.1) Potri.015G033600 [exp] 202 / 2e-64 AT1G17950 254 / 1e-85 myb domain protein 52 (.1) Potri.002G073500 [exp] 204 / 7e-64 AT1G17950 202 / 9e-64 myb domain protein 52 (.1) Potri.012G039400 [exp] 199 / 4e-63 AT1G17950 267 / 1e-90 myb domain protein 52 (.1) Potri.007G134500 [exp] 191 / 9e-60 AT1G17950 246 / 5e-82 myb domain protein 52 (.1) Potri.017G017600 [exp] 190 / 1e-59 AT1G17950 243 / 3e-81 myb domain protein 52 (.1) Potri.007G106100 [exp] 190 / 3e-59 AT4G33450 207 / 2e-66 myb domain protein 69 (.1) Potri.008G088000 [exp] 192 / 6e-58 AT1G69560 229 / 2e-71 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.010G167500 [exp] 190 / 2e-57 AT1G69560 237 / 8e-75 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.019G040900 [exp] 186 / 2e-56 AT1G26780 211 / 4e-66 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10028638 pacid=23164487 polypeptide=Lus10028638 locus=Lus10028638.g ID=Lus10028638.BGIv1.0 annot-version=v1.0 ATGGGAGATCAATCGGGAGTTTGTGATCATGAAGCTGGCAAAGGAGGAGGAGGAGGAGTAACTAAGTATAATTCTTGCAACTCTTCTTCTTCATCTTCTA CTTATAATAATAACAATTCATCATCGTCTTGTCCAAGAGGCCATTGGAGGCCAGCTGAAGATGAGAAACTACGGCAGCTTGTCGAAAAGTATGGTGCTCA GAACTGGAACTCCATAGCTGAGAAGCTCCATGGCAGATCTGGGAAGAGCTGTAGATTGAGGTGGTTCAACCAACTTGACCCGAGAATCAACCGAAGACCC TTCACAAAAGAGGAAGAGGAGAGGTTGTTAGTTGCTCACCGTATCCACGGTAACAAATGGGCGTTCATCTCCCGCCTCTTTCCCGGTCGGACCGATAACG CAGTCAAGAACCATTGGCACGTCATCATGGCCCGCAAGCAACGGGAACATTCCAAGCTCAGCGACAACAAGTTTGTCTCGTCGTCTAGGTTTTGCCCTAC TAGCAAAACCAACACTACTACTAGCTCACCACAATCATATTTTAAGGAGGCTATTAATGGTAATTACCATAGTCAATACATCTACAACAAGAGTGGTTGC GGTCCGTGCATTGATCATACGGGCCGTGGTTCGAATTTGTGGAACTGGGTCGGGTGCAGAGTCATCGTTCCAAGCCGGTTTGGGTATGGCTCGAAGGTCG GAGATCATGGTAATCACGATTATAATGACGCGATTAAGGGTCACAATCATGATATCGTAAAGAATCAAAGAGTAGAGGATCACAATGAGGAAGAAGAAGA CGAAAGGAGGAGATCAGAAAGTGTTGCTCCCAGCTTCATTGATTTTCTTGGCGTGGGTGTTTCCTCATCTTGA
AA sequence Show only first row Show all	>Lus10028638 pacid=23164487 polypeptide=Lus10028638 locus=Lus10028638.g ID=Lus10028638.BGIv1.0 annot-version=v1.0 MGDQSGVCDHEAGKGGGGGVTKYNSCNSSSSSSTYNNNNSSSSCPRGHWRPAEDEKLRQLVEKYGAQNWNSIAEKLHGRSGKSCRLRWFNQLDPRINRRP FTKEEEERLLVAHRIHGNKWAFISRLFPGRTDNAVKNHWHVIMARKQREHSKLSDNKFVSSSRFCPTSKTNTTTSSPQSYFKEAINGNYHSQYIYNKSGC GPCIDHTGRGSNLWNWVGCRVIVPSRFGYGSKVGDHGNHDYNDAIKGHNHDIVKNQRVEDHNEEEEDERRRSESVAPSFIDFLGVGVSSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10028638 [exp]	0	1
AT2G27950			Ring/U-Box superfamily protein...		Lus10021403 [exp]	1.0	0.9223
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10001419 [exp]	3.2	0.9176
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10034829 [exp]	3.5	0.9176
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10018598 [exp]	3.9	0.9110
AT1G07200			Double Clp-N motif-containing ...		Lus10028281 [exp]	4.9	0.9120
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Lus10024422 [exp]	4.9	0.9091
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Lus10005042 [exp]	5.9	0.9049
AT2G16980			Major facilitator superfamily ...		Lus10023994 [exp]	6.0	0.8977
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10022360 [exp]	6.6	0.8979
AT4G33920			Protein phosphatase 2C family ...		Lus10019302 [exp]	7.9	0.8656

Compare expression of checked genes

Lus10028638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.