Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07040 574 / 0 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT5G48620 317 / 2e-93 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G35450 301 / 8e-88 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G53350 301 / 9e-88 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 291 / 2e-84 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58390 270 / 1e-76 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59780 265 / 5e-75 NB-ARC domain-containing disease resistance protein (.1) AT3G46530 262 / 2e-74 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT3G46710 260 / 8e-74 NB-ARC domain-containing disease resistance protein (.1) AT1G58410 260 / 2e-73 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018937 [exp] 1796 / 0 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 1343 / 0 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 1329 / 0 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014712 [exp] 1070 / 0 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 943 / 0 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 565 / 0 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10019530 [exp] 504 / 3e-168 AT3G07040 311 / 4e-95 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10003094 [exp] 438 / 1e-145 AT3G07040 169 / 4e-46 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10038983 [exp] 444 / 3e-140 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G216800 [exp] 578 / 0 AT3G07040 573 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134400 [exp] 488 / 3e-157 AT3G07040 427 / 3e-134 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099100 [exp] 483 / 7e-156 AT3G07040 482 / 8e-156 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.005G035400 [exp] 481 / 4e-155 AT3G07040 422 / 6e-133 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.018G013500 [exp] 476 / 2e-153 AT3G07040 484 / 7e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134475 [exp] 476 / 3e-153 AT3G07040 413 / 1e-129 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134450 [exp] 473 / 9e-152 AT3G07040 488 / 1e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134300 [exp] 471 / 6e-151 AT3G07040 487 / 2e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099000 [exp] 467 / 2e-149 AT3G07040 479 / 2e-154 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134500 [exp] 466 / 3e-149 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10028639 pacid=23164471 polypeptide=Lus10028639 locus=Lus10028639.g ID=Lus10028639.BGIv1.0 annot-version=v1.0 ATGGCTGGGCTGCCAGTGGAATATTTGGCACAGAAGATGGAGGATATCCTAGTGAAGGAAGCAGCTCTATTTGGAGAAGCTCGACATCAGGTAGAGGAGA TAAAGAAAGAGCTGATGAGCATGAGGTCGTTTCTCGAGGATGCTGATGACGATCCAGACGCTGCCAAATCGAAAGCTAGGCAAACCCAGGTGGCACAAGT CCGAGATTTGGTTTATGATGTTGAAGATATCATCGACAAGTTTATGTACCATATAAACAAGTGGAGGGGGAAGCATACTTTCGTACAGTACTTAAGAAGA CCATTTGGCTTTCCGAGGTACTATTGGGAGAGGCGACAGATTGGTACCGGACTCCAGAAGCTCAATGGCTTGATCCAGGCCATACCGGATAGGTATCAAC GGTATACAGTTGATCGTAATCAAGGATCAGTTTTGAGCTCAAGCTCACCCCGTGGAGGAGGAGTGGCAGTGTTCAATCCGGAGATAGCTTTGTTTCTGAG TGAGGATGACCTTGTTGGGATTGAAGCACCGAAAGAGGAACTTACCGGATTCCTGATGAATGGAGATTTGCAACGTACTACTATTTCGGTGCTTGGCATG GGTGGCTCTGGTAAGACCACTCTCGTTGCGAATTTGTTCAACTCTGCTTCGGTGAAGCAGAGATTTGATTGTGTTGCTTGGATTACTGTCTCGCAAACTT TCAACGTTGAGGAGCTGTTCCGAAGCTTGATCAAGGAAATCAACAGATCGGATGAGACGGGGGGAGGGATTCAGACTGATGATTTGAGTGCCTTGAGCTA TCGAGAGCTTTTGGAGAAGCTTGTGGCTTATTTAGAGCAGAAGAGTTATTTGGCCGTTCTGGATGATGTATGGAGTCCTGATGTGTGGAGCCAGATAAAA GTGTCTCTACCGAATGGCCAGAAGGGTAGCCGAGTCATACTCACAACCCGAATCGATCAGGTCGCTTTGCAGTCTACTTCGGAAGTCGGAAGCCACGTCT ACAATGTCAAACCGCTCGACAAGGAGAAAGCGTGGGACCTCTTCTGTCGTAGAGCCTTTTCATCGAGTCATTCGAAAACGTGTCCTCCAGAGCTTCAGAC TATAGCAGACGAGTTTGTTGAGAAATGCAAGGGTCTTCCGCTCGCAATTGCTTCAGTGGGCGGTCTTTTGGCCTTGAAGAGATGCACGATAGGAGAATGG ACGACGGTTCTCAAGAACTTACAGTGGGAGTTGAGTAACAATCCAATGCTTCAACCTGTAACAAGGATCCTGCTCTCGAGCTACAACGATCTTCCGTATC ATCTGAAATGTTGCTTCCTGTACTTTGCTATGTTCCCAGAGGACCACAAAATCTGGTGCGACCGGCTTATCAAGTTGTGGATGGCGGAGGGATTCGTGGA ACCGGGTGTCAATGGAGTTTCACCGGAAGAAGTCGGTATGCGATACATAAAGGAACTAATCGGCCGGAACTTGTTCCAAGCTGCGAGCTGGGAGATGTAC GGGGACCACGGAAAATGTAAGATGCATGATATGTACAGAGAGCTTGCTCTTACTATATCGAATGATGAGAACTTTTGCTCGGTGTATGATGTCGGAAGTC GACCAATTACTCAAGATAACAGATCCACTCATGGTCGACGTTTGTCCATTCATCAGGCGAGCAATGAGTCGGAGGTTATCAACTTGCTCAAAGATATGCG ACGTTTACGATCGTTCTTCTTGTTTGCGTCTAAAGTTCGTCCTTTATCTCTGAGCAAACTGCACTGGAAGCGCAATCGGCTCCTTCGTGTGATCGATATG GAAAGCGCTCCGGTCGAAGAACTATCCGATGATATAGGCACTTTGTTGAACTTGAAGTACTTGAACTTGAGCTTCACTATGGTGAAGAAGCTCCCCAAGA CTGTTGGAAAGTTGCAGAGCCTTGAAAGCCTCGACATTGGAAACACCGATATCGAATCTCTTCCGAGCGAAGTCGTGAAGTGGAAGAACCTACGCCACTT GTTTGCTGGCCGGCTGAAATTCGGGAGGCTTCTGGAGTACAATAAATTAAAAGGGGTCAAAGTTCCGTCCGGCTCGGATATCAGTTCTCTTAAGAACTTG CAGACTCTTCGGGTAGTTGAAGCAAACGCAGAGATAGTGAAGCAACTTAGAACAATGATCCAACTCGTACAGCTCGGGATAACAAACGTAGAAGGCCGAG CTCAGATGGAAGATCTGTGCTCCTCCCTTCGAAACATGGTTCTACTACGTTGGTTAGTCGTCGTAGCAAGCAAAGAAGATGAACTCCTCCAAATGGACTC GCTCAACGAACCATCCACATTGTCCAATTCGACTCCTCTGCTTCAACTTCTCGAATATCTCATCCTGTGCGGGAAGCTGAACAGCTTCCCTGACTGGATT AGCTCGCTGCAAAGCTTGACAACGATAAGGTTGATCTGGAGCAGGCTACCGGTGGAAGAAGATCCGGTCGTACATCTCCAAGGGATGAACAACTTGAGGA ATGTTTGGCTTCACAATGCCTACCAAGGTACAGAGTTGAAGTTCATCAAAGGGTTCAACAATCTAAGGGCATTGGCATTAGGCAATCTGCCGATGCTAGA GAAGGTGACGATTGGAGAAGAAGGAGGGGGAGTAGTGATGCCGGACCTTGGAATCATTCTGATACGAGACTGTCCGAATCTGAAGATGATAACGGAAGGG ATCAGGTGTCTGTCCAAGCTCGAAGAGCTGAGGCTCGAGGATGTTTCATTTGAGCTGGTGGAGCGGATTCATGGACCAGATCGTGCCAACTTTCGACACA TACCCCTCATCTCGTGTAAGTATTACTCCCCAACTGGGACTTACATCAGTGAAAGGATTCTTCTTGATTGA
AA sequence Show only first row Show all	>Lus10028639 pacid=23164471 polypeptide=Lus10028639 locus=Lus10028639.g ID=Lus10028639.BGIv1.0 annot-version=v1.0 MAGLPVEYLAQKMEDILVKEAALFGEARHQVEEIKKELMSMRSFLEDADDDPDAAKSKARQTQVAQVRDLVYDVEDIIDKFMYHINKWRGKHTFVQYLRR PFGFPRYYWERRQIGTGLQKLNGLIQAIPDRYQRYTVDRNQGSVLSSSSPRGGGVAVFNPEIALFLSEDDLVGIEAPKEELTGFLMNGDLQRTTISVLGM GGSGKTTLVANLFNSASVKQRFDCVAWITVSQTFNVEELFRSLIKEINRSDETGGGIQTDDLSALSYRELLEKLVAYLEQKSYLAVLDDVWSPDVWSQIK VSLPNGQKGSRVILTTRIDQVALQSTSEVGSHVYNVKPLDKEKAWDLFCRRAFSSSHSKTCPPELQTIADEFVEKCKGLPLAIASVGGLLALKRCTIGEW TTVLKNLQWELSNNPMLQPVTRILLSSYNDLPYHLKCCFLYFAMFPEDHKIWCDRLIKLWMAEGFVEPGVNGVSPEEVGMRYIKELIGRNLFQAASWEMY GDHGKCKMHDMYRELALTISNDENFCSVYDVGSRPITQDNRSTHGRRLSIHQASNESEVINLLKDMRRLRSFFLFASKVRPLSLSKLHWKRNRLLRVIDM ESAPVEELSDDIGTLLNLKYLNLSFTMVKKLPKTVGKLQSLESLDIGNTDIESLPSEVVKWKNLRHLFAGRLKFGRLLEYNKLKGVKVPSGSDISSLKNL QTLRVVEANAEIVKQLRTMIQLVQLGITNVEGRAQMEDLCSSLRNMVLLRWLVVVASKEDELLQMDSLNEPSTLSNSTPLLQLLEYLILCGKLNSFPDWI SSLQSLTTIRLIWSRLPVEEDPVVHLQGMNNLRNVWLHNAYQGTELKFIKGFNNLRALALGNLPMLEKVTIGEEGGGVVMPDLGIILIRDCPNLKMITEG IRCLSKLEELRLEDVSFELVERIHGPDRANFRHIPLISCKYYSPTGTYISERILLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10028639 [exp]	0	1
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10018839 [exp]	1.0	0.9443
AT1G69840			SPFH/Band 7/PHB domain-contain...		Lus10037213 [exp]	1.4	0.9204
AT2G23810		TET8	tetraspanin8 (.1)		Lus10008891 [exp]	2.4	0.8989
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10011879 [exp]	3.2	0.8464
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10012319 [exp]	4.5	0.8817
AT5G03330			Cysteine proteinases superfami...		Lus10013813 [exp]	5.3	0.8124
AT1G53400			Ubiquitin domain-containing pr...		Lus10007315 [exp]	6.7	0.8492
AT4G13450			Adenine nucleotide alpha hydro...		Lus10014459 [exp]	8.0	0.8494
AT1G59710			Protein of unknown function (D...		Lus10030804 [exp]	8.1	0.8776
AT5G01760			ENTH/VHS/GAT family protein (....		Lus10022753 [exp]	8.5	0.8279

Compare expression of checked genes

Lus10028639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.