Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33710 72 / 1e-14 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT1G43160 71 / 4e-14 AP2_ERF RAP2.6, RAP2.06 related to AP2 6 (.1) AT5G50080 70 / 9e-14 AP2_ERF ERF110 ethylene response factor 110 (.1) AT5G64750 72 / 1e-13 AP2_ERF ABR1 ABA REPRESSOR1, Integrase-type DNA-binding superfamily protein (.1) AT5G61890 69 / 5e-13 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G07310 66 / 5e-12 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G13330 65 / 5e-12 AP2_ERF RAP2.6L related to AP2 6l (.1) AT3G16770 60 / 5e-10 AP2_ERF RAP2.03, ATEBP, RAP2.3 ,ERF72 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) AT2G47520 58 / 5e-10 AP2_ERF AtERF71, ERF71, HRE2 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 2, Arabidopsis thaliana ethylene response factor 71, Integrase-type DNA-binding superfamily protein (.1) AT1G72360 57 / 3e-09 AP2_ERF AtERF73, HRE1 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000858 [exp] 186 / 2e-57 ND / Lus10000859 [exp] 160 / 9e-49 ND / Lus10005805 [exp] 71 / 3e-13 AT5G61890 120 / 4e-32 Integrase-type DNA-binding superfamily protein (.1) Lus10006796 [exp] 70 / 4e-13 AT5G61890 122 / 8e-33 Integrase-type DNA-binding superfamily protein (.1) Lus10022426 [exp] 66 / 7e-12 AT5G61890 170 / 1e-51 Integrase-type DNA-binding superfamily protein (.1) Lus10014054 [exp] 59 / 7e-10 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10037448 [exp] 60 / 1e-09 AT1G53910 244 / 4e-78 related to AP2 12 (.1.2.3) Lus10008214 [exp] 59 / 1e-09 AT1G72360 154 / 2e-45 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10003601 [exp] 59 / 1e-09 AT1G72360 144 / 2e-41 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G195000 [exp] 183 / 2e-53 AT5G50080 108 / 5e-27 ethylene response factor 110 (.1) Potri.002G065600 [exp] 161 / 3e-45 AT5G50080 88 / 6e-20 ethylene response factor 110 (.1) Potri.007G076800 [exp] 86 / 2e-18 AT2G33710 104 / 2e-26 Integrase-type DNA-binding superfamily protein (.1.2) Potri.005G087200 [exp] 77 / 2e-15 AT2G33710 87 / 4e-20 Integrase-type DNA-binding superfamily protein (.1.2) Potri.001G067600 [exp] 67 / 1e-12 AT5G13330 130 / 1e-37 related to AP2 6l (.1) Potri.003G162500 [exp] 66 / 2e-12 AT5G13330 142 / 5e-42 related to AP2 6l (.1) Potri.012G108500 [exp] 64 / 2e-11 AT5G61890 144 / 3e-42 Integrase-type DNA-binding superfamily protein (.1) Potri.009G101900 [exp] 63 / 4e-11 AT4G34410 119 / 2e-32 redox responsive transcription factor 1 (.1) Potri.010G006800 [exp] 62 / 8e-11 AT3G16770 130 / 5e-37 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.008G210900 [exp] 62 / 1e-10 AT3G16770 146 / 5e-43 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10028679 pacid=23164484 polypeptide=Lus10028679 locus=Lus10028679.g ID=Lus10028679.BGIv1.0 annot-version=v1.0 ATGATGGGTAACAGTAGCAGCAATATCGTTTCTAATCAGACGACTCCTAGGAGCGCTAGGGAGATGTCCGCCATGGTTTCTGCTCTGACCCACGTCGTCT CCGGCACCGGACAGTTGGGATACGGCGGAGCTCCGTCGACGGCGAGTTCTGGTAATTCTTCTGGGTTGTGGACGGCGGTTGGGCAGAAGAGAGGAAGAGA AGATGGAAACCGAGGGGAAGGTTCGAGTAATCAATTGGTCGATAGGGAAGTGGTTTTCCGTGGTGGGTTCGATCGTGATTTCGTCGTCCATGGCGGTGAT TCTTCTTCCTCCGGTGCAACTGTGAAGGTAGAGGACTTAACAATCCCCGCCATTTCCTCCGCCGTGGCGGTGGTGGCCACCGTTTCCAACGCAGAGGTGG CAAATTCTGCAGAGGACTCAGGCGGCGTGGAAAGGAGGAGGAGGTACAGAGGAGTGAGGCAGAGACCGTGGGGGAAATGGGCGGCAGAGATACGAGATCC GCACAAGGCGGCGAGAGTCTGGCTGGGGACATTCGACACAGCGGAGGCCGCCGCCAGAGCTTACGACGAAGCCGCCCTTCGATTCAGAGGAAGCAGAGCC AAGCTCAATTTCCCGGAGAATGTCCGCCTCCTCCCTCACCAAATCCACAATGTCACCTCCGCTGCCTCATCCTCCTCCTCCTCCTCCACCGTCCGCCACA TCGTCCCCCGCATTCCTCCGCCGCAGCAGGTTCCTCCGTCGCCGTCATTTCTCCCTTCGGTTCATCATCAGGCAGAATTCATGAGGGATTACTGGCAGTA CTCGCAGTTACTGCAGAGCTCCGGCGAGTTTCAGGCGCGCCAGCAGCCTCCGACTTTGCTGGAGCAGTTGCTGTACACCCCGCAGCACGCTCCTCCGACG CTGTCTTTGCCATTGCCATCGACAACTTCTCCGCCGTCTATTCGAGCTTCTCCTTCTACTACTACTTCATTTCCCTTGCTTTTCGCGGGTCAGCAACAAC CCGGTTACTTCCGGCCGAATCAGAATCCAGACCCGACTCAGAATCTGAACCGGAATCCGACAGCCGGTTCAGATTTTCCGGTGCCACCGTGGTCACATTC TTCTACTAATTATCCTCCGTCTTCTAGTTGA
AA sequence Show only first row Show all	>Lus10028679 pacid=23164484 polypeptide=Lus10028679 locus=Lus10028679.g ID=Lus10028679.BGIv1.0 annot-version=v1.0 MMGNSSSNIVSNQTTPRSAREMSAMVSALTHVVSGTGQLGYGGAPSTASSGNSSGLWTAVGQKRGREDGNRGEGSSNQLVDREVVFRGGFDRDFVVHGGD SSSSGATVKVEDLTIPAISSAVAVVATVSNAEVANSAEDSGGVERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGSRA KLNFPENVRLLPHQIHNVTSAASSSSSSSTVRHIVPRIPPPQQVPPSPSFLPSVHHQAEFMRDYWQYSQLLQSSGEFQARQQPPTLLEQLLYTPQHAPPT LSLPLPSTTSPPSIRASPSTTTSFPLLFAGQQQPGYFRPNQNPDPTQNLNRNPTAGSDFPVPPWSHSSTNYPPSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10028679 [exp]	0	1
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10030033 [exp]	4.2	0.9574
AT1G80360			Pyridoxal phosphate (PLP)-depe...		Lus10011479 [exp]	4.5	0.9522
AT5G57510			unknown protein		Lus10028472 [exp]	5.7	0.9673
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Lus10027998 [exp]	7.7	0.9385
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030589 [exp]	8.2	0.9676
AT5G36930			Disease resistance protein (TI...		Lus10014671 [exp]	10.7	0.9582
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10010534 [exp]	11.4	0.9661
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10003128 [exp]	13.9	0.9577
AT2G31945			unknown protein		Lus10013740 [exp]	19.0	0.9496
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10022722 [exp]	19.3	0.9505

Compare expression of checked genes

Lus10028679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.