Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64110 1078 / 0 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT4G28000 997 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52882 961 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G02890 457 / 2e-144 AAA-type ATPase family protein (.1.2) AT4G02480 442 / 1e-138 AAA-type ATPase family protein (.1) AT4G24860 399 / 1e-123 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 365 / 3e-112 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G19740 361 / 2e-110 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G62130 334 / 4e-100 AAA-type ATPase family protein (.1) AT4G27680 278 / 1e-85 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017535 [exp] 1484 / 0 AT1G64110 1157 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10024692 [exp] 1245 / 0 AT1G64110 1176 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10027551 [exp] 983 / 0 AT5G52882 1136 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10039309 [exp] 983 / 0 AT5G52882 1140 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10036347 [exp] 416 / 1e-128 AT4G02480 1395 / 0.0 AAA-type ATPase family protein (.1) Lus10010282 [exp] 412 / 1e-127 AT4G02480 1408 / 0.0 AAA-type ATPase family protein (.1) Lus10010204 [exp] 363 / 3e-111 AT3G19740 1242 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017405 [exp] 355 / 9e-108 AT3G19740 1223 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013429 [exp] 348 / 2e-104 AT1G50140 1151 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G097600 [exp] 1095 / 0 AT1G64110 1159 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.003G133700 [exp] 1089 / 0 AT1G64110 1145 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.012G035400 [exp] 1006 / 0 AT5G52882 1137 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G026900 [exp] 987 / 0 AT5G52882 1146 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G131000 [exp] 462 / 1e-146 AT1G02890 1432 / 0.0 AAA-type ATPase family protein (.1.2) Potri.002G205900 [exp] 429 / 5e-134 AT1G02890 1445 / 0.0 AAA-type ATPase family protein (.1.2) Potri.012G096300 [exp] 421 / 1e-130 AT4G02480 1153 / 0.0 AAA-type ATPase family protein (.1) Potri.015G094100 [exp] 417 / 4e-129 AT4G02480 1128 / 0.0 AAA-type ATPase family protein (.1) Potri.005G093300 [exp] 350 / 2e-106 AT3G19740 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G069800 [exp] 350 / 6e-106 AT1G50140 1215 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10028752 pacid=23177227 polypeptide=Lus10028752 locus=Lus10028752.g ID=Lus10028752.BGIv1.0 annot-version=v1.0 ATGGAGCAGAAGCAGTTCCTGTTATCGGCATTGGGCGTTGGTGTCGGGGTAGGGGTCGGGCTAGGATTAGCGTCGCCGACAGTAAGCAAATGGACCGGCG GCAATGTGCCTCCTACCAACGCCATCACGGGAGATAAGTTGGAGCAAGAATTGCTCCGACAAGTGATTCACGGAAGAGAAAGCGGCGTTACATTTGCCGA ATTTCCTTATTACCTCAGTGAGCAGACTCGAGTATTGCTGACGAGTGCTGCGTATGTACACTTGAAACATGCGGAAGTTTCAAAGTACACAAGAAACCTT TCTCCTGCTAGTCGAACTATACTGCTTTCTGGCCCTGCAGAATCTTACCAGCAAATGCTTGTCAAGGCTTTAGCTCATTACTTTGATGCCAAACTGCTGC TATTAGATGTCACCGACTTTTCTCTCAAGCTTGTTTTGCTTCAGATCCAGAGCAAGTACGGCACTAGCAAGGATTCGATAAGGAGGTCTACTTCAATGGA GCGACTATCCGGTTTCCTGGGATCCTTATCAATACTGCCGCAAGAAAAGGAACCCAGAGGCACTGGTACTTTACGCAGGCAACACAGTGGAGTGGACCTC TCATCATCAAGAGGGATGGAAGGTTCCTCGAATTTTCCAAAGCTACGAAGGAACTCCTCTGCCTCTGCTAATATGAACTTGCTTGCCTCGCAATCTGCTT CTTCAACTACAGCTCCTTTGAGGCGACAAAGCAGTTTGTCTGTTGATGAGAGGCTTCTGATACAATCTCTTTACAAGGTGCTGGTTTATGTCTCCAAAAG TAGTCCAATCGTGCTGTATCTTAGGGATGTCGACAATTTCTTAGCAAGGTCGCAAAGAATCTATAACCTGTTCCACAAAATGGTAAAGAAGTTGTGTGGT TCAGTGCTGATTCTCGGCTCGAGAAGCGTAGACTTGGAAAATGATGACAGGGAACCGGATGAAACGCTCACTCTTCTGTTCCCATATAACATCGAGATCA AGCCTCCCGAAGATGCGAACCAACATCTCAACTGGAAGTCCCAATTGGAGGAGGATATGAAGATGATCCAGGTTCAGGACAACAGAAACCACATCATGGA GGTCCTTTCATCCAATGATCTTGACTGTGATGATCTGGATGCCATCTGTATGGCAGACACAGTGGTTCTTGGTAACTACATTGAAGAAATAGTTGTGTCT GCCATTTCTTATCATCTTATGAATAACAAGGACCCTGATTACCGTAGTGGCAAACTTATTATATCATCTAAGAGTTTGTCCCATGGGTTGAGCATTTTCC AAGGGAAATCTGTTGGTAATACTCTCAAGTTAGAAGCTCAGGCTGAACTTCCAAAGAAAGAAGGGAACGAGCCTTTAGCCGCCGTGAAGCTAGAAACAAA AGCTGACACCGTAATTCCAGAAAAGAAGGGCGACGCTGTCACACCAAAGGCTGATGCTGCTGTGCCAGCGCCATCAAAAGTTGTTGAGGTTGCTCCAGAC AATGAATTCGAGAAGCGCATAAGGCCAGAAGTGATACCAGCAAACGAGATCAATGTAACCTTCGCGGACATTGGTTCTTTGGAGGAGACAAAGGAGTCCC TCCAGGAACTAGTGATGCTTCCCCTAAGACGACCTGACTTGTTCAAGGGTGGACTTCTGAAGCCCTGCAGGGGAATTTTGCTATTCGGACCTCCTGGCAC GGGGAAGACAATGCTGGCCAAGGCCATTGCGAGGGAAGCTGGTGCCAGCTTCATTAATGTATCGATGTCCACCATCACATCGAAATGGTTCGGTGAAGAT GAAAAGAATGTCCGAGCATTGTTCTCGCTGGCGTCCAAAGTCTCCCCAACGATCATCTTTGTGGATGAGGTCGATAGCATGCTTGGTCAGCGAACAAGGG TGGGAGAGCATGAAGCAATGAGGAAGATCAAGAACGAGTTTATGACTCATTGGGACGGTCTAGCTACCAAACAAGGGGAGCGTATCCTGGTTCTTGCTGC TACGAACCGGCCGTTTGATCTTGATGAGGCTATAATCAGACGTTTCGAGCGCAGGATAATGGTGGGACTACCTTCCGTGGAGAACAGGGAAAGGATTATG AAGACTCTGTTGTCGAAGGAAAAGGTTGATGAACGACTGGATTTCAAGGAGCTGGCAACCCTGACAGAAGGGTTCTCAGGAAGTGATCTCAAGAACCTGT GTACTACTGCTGCTTATCGGCCAGTTAGAGAGTTGATACAGCAGGAAAGGAAACACATGGAGAAAAAGAAAGCTTCAGAAGCACAAAACTCAGGTGAAGC TGCAGCTGAGAAACCCAAGGAGGATAGAGTAATCAGCCTCCGGGCATTGAACATGGAAGATTTCAGGCTGGCTAAGAACCAGGTGTCAGCGAGCTTTGCA GCAGAAGGGTCTGTAATGTCGGAGTTGACGCAATGGAACGACTTGTATGGTGAAGGTGGATCCAGGAAAAAGGAACAGTTGTCCTACTTCTTGTGA
AA sequence Show only first row Show all	>Lus10028752 pacid=23177227 polypeptide=Lus10028752 locus=Lus10028752.g ID=Lus10028752.BGIv1.0 annot-version=v1.0 MEQKQFLLSALGVGVGVGVGLGLASPTVSKWTGGNVPPTNAITGDKLEQELLRQVIHGRESGVTFAEFPYYLSEQTRVLLTSAAYVHLKHAEVSKYTRNL SPASRTILLSGPAESYQQMLVKALAHYFDAKLLLLDVTDFSLKLVLLQIQSKYGTSKDSIRRSTSMERLSGFLGSLSILPQEKEPRGTGTLRRQHSGVDL SSSRGMEGSSNFPKLRRNSSASANMNLLASQSASSTTAPLRRQSSLSVDERLLIQSLYKVLVYVSKSSPIVLYLRDVDNFLARSQRIYNLFHKMVKKLCG SVLILGSRSVDLENDDREPDETLTLLFPYNIEIKPPEDANQHLNWKSQLEEDMKMIQVQDNRNHIMEVLSSNDLDCDDLDAICMADTVVLGNYIEEIVVS AISYHLMNNKDPDYRSGKLIISSKSLSHGLSIFQGKSVGNTLKLEAQAELPKKEGNEPLAAVKLETKADTVIPEKKGDAVTPKADAAVPAPSKVVEVAPD NEFEKRIRPEVIPANEINVTFADIGSLEETKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAREAGASFINVSMSTITSKWFGED EKNVRALFSLASKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLATKQGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENRERIM KTLLSKEKVDERLDFKELATLTEGFSGSDLKNLCTTAAYRPVRELIQQERKHMEKKKASEAQNSGEAAAEKPKEDRVISLRALNMEDFRLAKNQVSASFA AEGSVMSELTQWNDLYGEGGSRKKEQLSYFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64110		DAA1	DUO1-activated ATPase 1, P-loo...		Lus10028752 [exp]	0	1
AT5G45370			nodulin MtN21 /EamA-like trans...		Lus10035693 [exp]	1.4	0.9512
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10006612 [exp]	2.0	0.9343
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10039364 [exp]	3.5	0.9214
AT5G01890			Leucine-rich receptor-like pro...		Lus10022738 [exp]	3.9	0.9278
AT3G10700		GalAK	galacturonic acid kinase (.1)		Lus10014251 [exp]	6.0	0.9015
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10013208 [exp]	7.7	0.9131
AT5G01890			Leucine-rich receptor-like pro...		Lus10014174 [exp]	9.5	0.9114
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10030205 [exp]	11.3	0.9071
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10010647 [exp]	14.4	0.9006
AT1G68260			Thioesterase superfamily prote...		Lus10031959 [exp]	14.7	0.9049

Compare expression of checked genes

Lus10028752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.