Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11410 435 / 2e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23430 402 / 1e-141 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G23420 400 / 9e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT2G37540 325 / 4e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02540 307 / 6e-104 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G24050 251 / 4e-82 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 236 / 4e-76 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G64590 221 / 2e-70 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G27760 110 / 2e-27 FEY3, FEY FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G09750 103 / 2e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032280 [exp] 504 / 5e-180 AT4G11410 461 / 5e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035481 [exp] 439 / 6e-156 AT4G23430 479 / 6e-172 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10031101 [exp] 433 / 1e-153 AT4G23430 478 / 1e-171 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10024647 [exp] 410 / 8e-145 AT4G11410 461 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032282 [exp] 405 / 1e-142 AT4G23430 459 / 8e-164 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10035480 [exp] 403 / 6e-142 AT4G11410 444 / 5e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024648 [exp] 403 / 9e-142 AT4G23430 447 / 2e-159 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10035479 [exp] 404 / 2e-141 AT4G11410 444 / 2e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014975 [exp] 395 / 6e-138 AT4G23430 442 / 8e-157 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G128700 [exp] 444 / 5e-158 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G103000 [exp] 403 / 7e-142 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 398 / 5e-140 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.015G146600 [exp] 372 / 1e-129 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143600 [exp] 368 / 1e-127 AT4G23430 401 / 2e-140 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143800 [exp] 365 / 5e-127 AT4G23420 427 / 3e-151 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G083900 [exp] 334 / 1e-114 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G081102 [exp] 234 / 3e-75 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.T124508 [exp] 234 / 3e-75 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.001G086900 [exp] 232 / 3e-74 AT4G24050 441 / 2e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10028781 pacid=23177283 polypeptide=Lus10028781 locus=Lus10028781.g ID=Lus10028781.BGIv1.0 annot-version=v1.0 ATGTGGGTTTTCGGGTGGAAAGGTGAATCTGGATTCTCAGCTCGTTCAACCGCCGAGCAAGTTACCAGCGGCATTGATGGCACCTCCCTTAGTGCCATCG TTACAGGAGCATCGAGTGGCATTGGGTTGGAGACAACCCGAGTCCTTGCTTTACGAGGTGTTCAAATAGTGATGGCAGTAAGGAATGTGGATGCTGGTTA TGAAGTTAGACGTTCAATCATGGAGGAGATCCCGACCGCTAAGCTTGATGTCATGAAGTTAGATCTCAGCTCACTCGCATCAGTCAGGAAATTCGCATCT GATTTCGCCTCCAAGGGCCTTCCACTCCACATTCTCATTAACAATGCAGGCATTATGGCATGTCCTTTCTCACTTTCTCAAGATAAGGTTGAACTCCAAT TTGCCACCAACCATTTGGGCCATTTTCTTCTGACAAATCTGTTGTTGGAGACCATGAAAAAGACTGCTCATGATAGCCGTAGAGAGGGAAGAATCGTCAT CGTGTCGTCACTTGCTCATAACTTCGCGTACAGTGAAGGAATCCGATTCGACAGAATCAATGATGAATCGGGATACTTTACTATGCGTGCTTATGGACAG TCGAAGCTCGCAAACATACTGCACACTAAGGAGCTAGCCAGACGTCTCCAGGAAGATGGTGCCAACATCTCTGTTAATTCTCTTCACCCCGGGTCGATAG TTACCAACCTTTTGCGGTACCACAGTTTGGTAAATGGGATTGCGAACATGTTTGCTAGATTTGTGCTCAAGAATGTTCAACAGGGAGCTGCTACTAGCTG CTATCTAGCGCTGCACCCTAAAGTTGAAGGAGTTACTGGTAAATTCTTCATGGACTGTAATTTAGCTGAACCCAACTCACAAGGGGGAGACGTGAAATTG GCCAAGAAGCTCTGGGACTTCAGCTTGAGCTTAACCACCGTCAAATCAAACTAG
AA sequence Show only first row Show all	>Lus10028781 pacid=23177283 polypeptide=Lus10028781 locus=Lus10028781.g ID=Lus10028781.BGIv1.0 annot-version=v1.0 MWVFGWKGESGFSARSTAEQVTSGIDGTSLSAIVTGASSGIGLETTRVLALRGVQIVMAVRNVDAGYEVRRSIMEEIPTAKLDVMKLDLSSLASVRKFAS DFASKGLPLHILINNAGIMACPFSLSQDKVELQFATNHLGHFLLTNLLLETMKKTAHDSRREGRIVIVSSLAHNFAYSEGIRFDRINDESGYFTMRAYGQ SKLANILHTKELARRLQEDGANISVNSLHPGSIVTNLLRYHSLVNGIANMFARFVLKNVQQGAATSCYLALHPKVEGVTGKFFMDCNLAEPNSQGGDVKL AKKLWDFSLSLTTVKSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10028781 [exp]	0	1
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Lus10014700 [exp]	3.2	0.7693
AT5G50340			ATP-dependent peptidases;nucle...		Lus10025843 [exp]	3.5	0.8167
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Lus10030831 [exp]	4.0	0.8088
AT3G14890			phosphoesterase (.1.2)		Lus10038650 [exp]	7.3	0.7359
AT1G12790			unknown protein		Lus10003529 [exp]	11.2	0.7388
AT3G63240			DNAse I-like superfamily prote...		Lus10022074 [exp]	12.3	0.7349
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10011576 [exp]	12.5	0.7212
AT3G12530		PSF2	PSF2 (.1.2)		Lus10000955 [exp]	17.0	0.7485
AT3G56250			unknown protein		Lus10030552 [exp]	17.9	0.7176
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10041020 [exp]	18.0	0.7457

Compare expression of checked genes

Lus10028781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.