Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45000 748 / 0 AAA-type ATPase family protein (.1.2) AT5G43010 747 / 0 RPT4A regulatory particle triple-A ATPase 4A (.1) AT1G53750 331 / 2e-110 RPT1A regulatory particle triple-A 1A (.1) AT5G20000 331 / 2e-110 RPT6A AAA-type ATPase family protein (.1) AT5G19990 330 / 4e-110 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT2G20140 321 / 3e-106 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT4G29040 321 / 3e-106 RPT2A regulatory particle AAA-ATPase 2A (.1) AT1G53780 323 / 7e-105 peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (.1.2.3) AT5G58290 308 / 2e-101 RPT3 regulatory particle triple-A ATPase 3 (.1) AT3G05530 294 / 7e-96 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017475 [exp] 798 / 0 AT1G45000 759 / 0.0 AAA-type ATPase family protein (.1.2) Lus10017972 [exp] 767 / 0 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2) Lus10041964 [exp] 762 / 0 AT1G45000 752 / 0.0 AAA-type ATPase family protein (.1.2) Lus10031815 [exp] 333 / 1e-110 AT1G53750 828 / 0.0 regulatory particle triple-A 1A (.1) Lus10031243 [exp] 332 / 4e-109 AT1G53750 841 / 0.0 regulatory particle triple-A 1A (.1) Lus10017762 [exp] 328 / 4e-109 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10015524 [exp] 316 / 8e-106 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10011901 [exp] 321 / 3e-104 AT2G20140 844 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10006976 [exp] 310 / 7e-102 AT4G29040 828 / 0.0 regulatory particle AAA-ATPase 2A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G158600 [exp] 769 / 0 AT1G45000 752 / 0.0 AAA-type ATPase family protein (.1.2) Potri.009G120500 [exp] 765 / 0 AT1G45000 744 / 0.0 AAA-type ATPase family protein (.1.2) Potri.002G031400 [exp] 759 / 0 AT1G45000 745 / 0.0 AAA-type ATPase family protein (.1.2) Potri.005G231700 [exp] 756 / 0 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2) Potri.006G216600 [exp] 332 / 2e-110 AT1G53750 804 / 0.0 regulatory particle triple-A 1A (.1) Potri.001G161700 [exp] 331 / 3e-110 AT1G53750 809 / 0.0 regulatory particle triple-A 1A (.1) Potri.018G056600 [exp] 328 / 4e-109 AT1G53750 803 / 0.0 regulatory particle triple-A 1A (.1) Potri.008G144100 [exp] 327 / 1e-108 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.010G098300 [exp] 323 / 3e-107 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.014G194700 [exp] 322 / 1e-106 AT4G29040 829 / 0.0 regulatory particle AAA-ATPase 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10028807 pacid=23177099 polypeptide=Lus10028807 locus=Lus10028807.g ID=Lus10028807.BGIv1.0 annot-version=v1.0 ATGTCGACCGAAGCTGACGAAGCTGCAAGGCGGCGCACGGTGGAAGCTGATTACAGGAAGAAGCTCCTTCAACGCAGGGAGCTTGAATCTAGAGTTCGCG GAGGGTTTGTGTTTCCTGTATCAATGTCTGAGCTCGTTATGGGTGTAATGACCAGCTTCAATCGTACTGCTGCAGTGAAAGAGAACTTGCGGAGTTCGAA GAAGGAATTTGCAAAGACCGAGGATGATCTCAAGTCACTGCAGAGTGTTGGACAGATAATCGGCGAAGTGCTTAGGCCGCTTGACAACGAGCGCATGATT GTTAAAGCGAGCAGTGGTCCTAGATATGTGGTTGGCTGCCGCAGTAAAGTTGACAAAGAAAAGCTCACTGCTGGGACTCGTGTTGTTCTCGATATGACCA CTCTTACAATTATGAGGGCTCTTCCCCGCGAAGTTGACCCTGTGGTATATAATATGCTCCACGAAGACCCCGGTAATGTTAGCTACTCGGCTGTTGGAGG GTTGGGAGATCAGATTAGAGAGCTGAGGGAATCCATAGAACTCCCTCTTATGAATCCTGAACTCTTCTTGAGAGTGGGGATTAAACCTCCTAAGGGTGTT CTCCTCTATGGACCTCCTGGTACTGGAAAGACATTGTTAGCAAGGGCAATTGCGAGCAACATCGACGCTAACTTCTTGAAGGTTGTGTCTAGTGCTATAA TCGACAAGTACATCGGTGAAAGTGCAAGGTTAATTCGAGAGATGTTTAATTATGCTCGCGATCATCAACCATGCATCATATTTATGGACGAGATTGATGC CATTGGTGGACGCCGTTTTAGTGAAGGGACGAGTGCTGACCGTGAAATTCAGCGAACACTCATGGAGTTGCTTAATCAGTTGGATGGTTTTGACCAGCTG GGGAAGGTTAAAATGATCATGGCCACAAACAGACCGGATGTCCTGGATCCTGCACTTCTCCGTCCGGGTCGTCTAGATAGGAAAATCGAGATCCCCCTGC CTAACGAGCAGTCAAGGATGGAGATTCTCAAAATCCATGCTGCAGGCATCGCCAAACACGGTGAAATCGACTACGAAGCAGTTGTGAAACTAGCTGAGGG ATTCAACGGTGCTGATCTTCGCAACGTCTGCACAGAAGCTGGCATGTCCGCGATCCGGGCAGAACGTGATTATGTCATCCATGAAGATTTCATGAAGGCT GTGAGAAAGTTGAATGAAGCGAAGAAACTCGAATCCAGTTCGCACTATAATGCCGATTTTGGAAAGGACTGA
AA sequence Show only first row Show all	>Lus10028807 pacid=23177099 polypeptide=Lus10028807 locus=Lus10028807.g ID=Lus10028807.BGIv1.0 annot-version=v1.0 MSTEADEAARRRTVEADYRKKLLQRRELESRVRGGFVFPVSMSELVMGVMTSFNRTAAVKENLRSSKKEFAKTEDDLKSLQSVGQIIGEVLRPLDNERMI VKASSGPRYVVGCRSKVDKEKLTAGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGV LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQL GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKA VRKLNEAKKLESSSHYNADFGKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45000			AAA-type ATPase family protein...		Lus10028807 [exp]	0	1
AT5G27490			Integral membrane Yip1 family ...		Lus10004473 [exp]	4.5	0.7766
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Lus10025050 [exp]	5.3	0.7622
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Lus10040742 [exp]	7.4	0.7933
AT3G48150		CDC23, APC8	anaphase-promoting complex sub...		Lus10004242 [exp]	13.3	0.7682
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10014288 [exp]	14.0	0.7464
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Lus10035522 [exp]	14.1	0.7488
AT5G25510			Protein phosphatase 2A regulat...		Lus10033069 [exp]	15.3	0.7598
AT5G63870		PP7, ATPP7	serine/threonine phosphatase 7...		Lus10020898 [exp]	15.4	0.7540
AT4G33945			ARM repeat superfamily protein...		Lus10012060 [exp]	20.2	0.7063
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Lus10028885 [exp]	21.8	0.7333

Compare expression of checked genes

Lus10028807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.