Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54320 264 / 2e-83 AP2_ERF ATWRI1, ASML1, WRI1 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) AT4G37750 230 / 5e-69 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT1G72570 225 / 1e-68 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G57390 228 / 4e-68 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT1G51190 222 / 6e-66 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT3G20840 222 / 1e-65 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT5G17430 217 / 6e-64 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) AT1G79700 209 / 2e-63 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT1G16060 201 / 4e-60 AP2_ERF ADAP ARIA-interacting double AP2 domain protein (.1.2) AT5G65510 187 / 1e-53 AP2_ERF PLT7, AIL7 PLETHORA 7, AINTEGUMENTA-like 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008939 [exp] 524 / 0 AT3G54320 303 / 2e-98 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10036719 [exp] 245 / 6e-76 AT3G54320 288 / 3e-93 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10037209 [exp] 245 / 1e-75 AT3G54320 286 / 1e-92 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10013268 [exp] 237 / 1e-74 AT3G54320 275 / 3e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10041618 [exp] 239 / 2e-74 AT1G79700 310 / 1e-104 Integrase-type DNA-binding superfamily protein (.1.2) Lus10001553 [exp] 239 / 4e-74 AT1G16060 331 / 3e-112 ARIA-interacting double AP2 domain protein (.1.2) Lus10030792 [exp] 241 / 5e-74 AT3G54320 280 / 6e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10024101 [exp] 235 / 7e-73 AT1G16060 308 / 1e-103 ARIA-interacting double AP2 domain protein (.1.2) Lus10037670 [exp] 231 / 2e-71 AT1G72570 355 / 1e-120 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G247200 [exp] 269 / 2e-85 AT3G54320 337 / 8e-113 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.008G011900 [exp] 258 / 6e-82 AT3G54320 359 / 3e-122 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.017G078600 [exp] 251 / 5e-79 AT3G54320 289 / 2e-94 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.010G092800 [exp] 248 / 3e-77 AT3G54320 259 / 2e-82 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.003G185300 [exp] 239 / 7e-75 AT1G16060 291 / 5e-97 ARIA-interacting double AP2 domain protein (.1.2) Potri.018G102200 [exp] 227 / 6e-70 AT1G16060 289 / 5e-96 ARIA-interacting double AP2 domain protein (.1.2) Potri.001G041500 [exp] 223 / 2e-68 AT1G16060 279 / 1e-91 ARIA-interacting double AP2 domain protein (.1.2) Potri.006G167700 [exp] 226 / 1e-67 AT5G57390 432 / 2e-146 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) Potri.002G114800 [exp] 228 / 3e-67 AT4G37750 459 / 5e-155 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.018G091600 [exp] 226 / 4e-67 AT5G57390 422 / 9e-142 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10028880 pacid=23177332 polypeptide=Lus10028880 locus=Lus10028880.g ID=Lus10028880.BGIv1.0 annot-version=v1.0 ATGAAATCGCCGCCGTCAAACCAGAAGAAGAACAACAAGAGGCAAAGGACGATAATATCCCCTTCTTCATCTTCCTCCTCTCTTTCCTCTCTCACTTCTA ATTCTTCCTGCTCTTCCAATTCTTCCAACAATTCCTCTCCCCAATCTCCTTCTTGCTCCTGCTCTTCCTCCCCTTGCTCTTCCTGCGATCTCTCCGCTGT AATTGTTCATCCTCCTCCGCCGCCTAATCATGATTTGGAGGAGGAGGAGAAAACAGCTGCTCCACCCAAAGCCGCCAAACGACGGAGAAGAACCCAATCA TCCAAGAAAGGCACCGGAAACAACAATGGCGGCGATCGCCCTCCTAAATCAAATGACGAAGACAAGATTGATGATCCCCTGCCTCCTCCCTCTGCACAAG GAAAAAGAAGCTCTGCTTTCAGGGGTGTCACCAGGCATAGATGGACTGGAAGATTTGAAGCTCATCTGTGGGATAAAAGCTCCTGGAACAACATGCACAA CAGGAAGGGTAGACAAGGGGCGTATGACGAAGAGGAAGCTGCAGCTCGGACTTACGACCTTGCTGCGTTGAAGTACTGGGGACCAGCCACCACCTTGAAT TTCGCTGTAGAAGGGTACGAGAAGGAGATGGAGGAGATGAGTAAAGTGAGCAGAGAAGAGTACTTGGCTTCCCTCCGCCGCCGGAGCTCCGGCTTCTCCA GAGGCGTCTCTAAGTACCGCGGCGTCGCCAGGCATCACCATAATGGACGGTGGGAAGCGCGAATTGGAAGAGTGTTGGGGAACAAGTACCTCTACCTCGG CACTTTCAACACACAGGAGGAGGCGGCAGAGGCGTATGACATGGCGGCATTGGAATACAGAGGATCCAACGCTGTCACCAACTTCGACGTGGCCATTTAC GTGGACCGCCTCAAGTCCAAAGGCGTCCAAGTCGACCAATTCCTCCAGCCAATTACTGACGTGGCAGCTGCTGAGGTGGCACCAGAACTATACATGAATG ACGACAATGCAGCCAAATTAGAACCATCCTCTGCCTCGTCACCACTTCCCCTGCCCTCATCCTCATCCGAACAAGAGGTGGCAATGATGATGGCTATGCC TCTGCCACCGGAGATGCCTCCCACCACGACGACAACGAATAACGGTGGCAGCATGATGGAGCTTCTGGAGTTGGAGAATGATGAGAACTGGAGCTTCTGT TTCGAGTACCCGGAGGACAACGCGGCCTCCTCGCAGCTGGCCCCCGAGGAGGGGTGCTGTATCTTGCCGGAGTTGTTCGGCGTGGATGGGGGAGGGTTCC AGCTTGAGGACATTGACTACTTGGTGTTTGACTCGTACCCGACTACGGCGGCCGCGGATGATGATGACGTGGGGAAGACCGAGAAGGAGAAGTTGTTGTT GTCGGAGGAGGATCATGGGGGCGGTGGGTCAAGGTCTCCTTCTTGTTCAACAACAACATCGGTTTCTTGTAACTAA
AA sequence Show only first row Show all	>Lus10028880 pacid=23177332 polypeptide=Lus10028880 locus=Lus10028880.g ID=Lus10028880.BGIv1.0 annot-version=v1.0 MKSPPSNQKKNNKRQRTIISPSSSSSSLSSLTSNSSCSSNSSNNSSPQSPSCSCSSSPCSSCDLSAVIVHPPPPPNHDLEEEEKTAAPPKAAKRRRRTQS SKKGTGNNNGGDRPPKSNDEDKIDDPLPPPSAQGKRSSAFRGVTRHRWTGRFEAHLWDKSSWNNMHNRKGRQGAYDEEEAAARTYDLAALKYWGPATTLN FAVEGYEKEMEEMSKVSREEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVLGNKYLYLGTFNTQEEAAEAYDMAALEYRGSNAVTNFDVAIY VDRLKSKGVQVDQFLQPITDVAAAEVAPELYMNDDNAAKLEPSSASSPLPLPSSSSEQEVAMMMAMPLPPEMPPTTTTTNNGGSMMELLELENDENWSFC FEYPEDNAASSQLAPEEGCCILPELFGVDGGGFQLEDIDYLVFDSYPTTAAADDDDVGKTEKEKLLLSEEDHGGGGSRSPSCSTTTSVSCN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10028880 [exp]	0	1
AT1G06930			unknown protein		Lus10025251 [exp]	2.4	0.8658
AT2G42520			P-loop containing nucleoside t...		Lus10015976 [exp]	3.6	0.8834
AT1G75800			Pathogenesis-related thaumatin...		Lus10034534 [exp]	5.3	0.8608
AT5G20080			FAD/NAD(P)-binding oxidoreduct...		Lus10030059 [exp]	13.6	0.8719
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10016179 [exp]	14.1	0.8062
AT1G09810		ECT11	evolutionarily conserved C-ter...		Lus10037364 [exp]	14.5	0.7684
AT3G60480			unknown protein		Lus10000560 [exp]	21.2	0.8118
AT5G19990		ATSUG1, RPT6A	regulatory particle triple-A A...		Lus10017762 [exp]	23.6	0.8595
AT2G37440			DNAse I-like superfamily prote...		Lus10025305 [exp]	24.5	0.8433
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10003686 [exp]	30.3	0.8394

Compare expression of checked genes

Lus10028880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.