Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00150 391 / 1e-127 GRAS ATHAM3, SCL6, LOM3 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) AT3G60630 327 / 2e-102 GRAS ATHAM2, LOM2 LOST MERISTEMS 2, ARABIDOPSIS THALIANA HAIRY MERISTEM 2, GRAS family transcription factor (.1) AT2G45160 322 / 4e-100 GRAS ATHAM1, LOM1 LOST MERISTEMS 1, ARABIDOPSIS THALIANA HAIRY MERISTEM 1, GRAS family transcription factor (.1) AT4G36710 219 / 4e-63 GRAS AtHAM4 Arabidopsis thaliana HAIRY MERISTEM 4, GRAS family transcription factor (.1) AT2G04890 147 / 4e-38 GRAS SCL21 SCARECROW-like 21 (.1) AT2G01570 142 / 2e-35 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT5G17490 139 / 7e-35 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT3G03450 137 / 5e-34 GRAS RGL2 RGA-like 2 (.1) AT1G50600 136 / 2e-33 GRAS SCL5 scarecrow-like 5 (.1) AT5G66770 135 / 3e-33 GRAS GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004353 [exp] 1183 / 0 AT4G00150 390 / 2e-127 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Lus10041721 [exp] 236 / 8e-69 AT4G36710 456 / 1e-156 Arabidopsis thaliana HAIRY MERISTEM 4, GRAS family transcription factor (.1) Lus10024029 [exp] 234 / 4e-68 AT4G36710 452 / 4e-155 Arabidopsis thaliana HAIRY MERISTEM 4, GRAS family transcription factor (.1) Lus10041540 [exp] 169 / 5e-44 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 167 / 4e-43 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10000539 [exp] 142 / 1e-35 AT4G17230 617 / 0.0 SCARECROW-like 13 (.1) Lus10017554 [exp] 142 / 1e-35 AT4G17230 612 / 0.0 SCARECROW-like 13 (.1) Lus10016596 [exp] 140 / 5e-35 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10012323 [exp] 139 / 2e-34 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G122800 [exp] 804 / 0 AT4G00150 376 / 1e-121 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.003G110800 [exp] 688 / 0 AT4G00150 366 / 2e-117 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.014G060200 [exp] 445 / 8e-147 AT4G00150 420 / 2e-139 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.014G060500 [exp] 442 / 8e-146 AT4G00150 429 / 8e-143 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.002G144700 [exp] 425 / 1e-138 AT4G00150 437 / 2e-145 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.002G144200 [exp] 419 / 4e-136 AT4G00150 411 / 2e-135 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.007G029200 [exp] 232 / 2e-67 AT4G36710 419 / 4e-142 Arabidopsis thaliana HAIRY MERISTEM 4, GRAS family transcription factor (.1) Potri.005G125800 [exp] 226 / 3e-65 AT4G36710 466 / 1e-160 Arabidopsis thaliana HAIRY MERISTEM 4, GRAS family transcription factor (.1) Potri.001G326000 [exp] 157 / 3e-40 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.010G110700 [exp] 147 / 4e-37 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10028934 pacid=23177130 polypeptide=Lus10028934 locus=Lus10028934.g ID=Lus10028934.BGIv1.0 annot-version=v1.0 ATGCCCTTCCATCTGGAAGGGAAGGGGGGTTTAGATACTGCTTCCATTTTCTCACAGCAAGAAGCTTGGAAGCTGCAACATCACAACAACAAGCAGGAAG TTAACAGCTTTACGGAGCCTATTTCAGTTCTTCATATGAGAAGGAGTCCTAGCCCACCCACATCGGCTTCCACTCTTTCCTCTTCCTTCAACGGCACCGC CGGCGGCACCACTCCGACGGCCGGCGGTGACAAAGCCCTTAATAATAATGACAGAAAAGACGAGTGGGCTAATGAGCTGCAGCCAATCCCAACTGGAGGG CTGGATATTGTTTCATCTGTTGGAGAAAGATGCGGTCTTGGACTGTATGATTGGGAGAACATGCTCTCTGAACCCACCCAAGAACAGTCCCTGCTGAGGT GGATCTCTGGTGGGGATGTCGACGACTCGTCGTTTGGACTCAAGCACCTTCTTCAGTCTAACAACAATAACAACGGCAGTGGTAATAATAATCCGCTGGA TTTTGACGGGATTGTTGATCAAGGACATGGAGGGTTTGAAGGAATTGGTGGAATTGGAGGTAGCATTGGTTCCAATTTGGGGGCTTTCCCTGCTTCAGGG TTTGTGGGCAACAATGGGAGAATTGCTCAAGCAGCAGCTGGTTTGGTATCTCCCAGCTCTTCTGGTTCTGGTTTGGTTAATTTCAAAGCTAATAATACTT TAGTTAATCTTCCTGCTGCTGCTTCTTTACCTTCTGCAATGCTTTACCATCCACAGCAACAAGTTGATGCTTTGGATGAGAAGCCACCGCATATTCTTAT GAACATGAATCCTCACCAACAACCAGCTCCAAACTTCTTCTTCCCTTTGCCATTTCCACAACAAGATCATTATCATCAACAACAACCTCAACCCAAGAGG CAGAATTCTGGTGGCAACAACATCATGGAACCAAACATTCCTCCGATGTTGCCAAAGCTCCCATTTTCAGATCCAGGAGATGATATATTCTTAAGGAAAC AGCAGCAACATCAACAGTTTCCTCCAGGGGTTCCGTTTCTCCTCCACCAGGGGATTCAGCCGCCATTAATGGGGAAAGATGACCCTGGAGGAGGAGGTCA ACAGCAACAGCATGCATTGCTGGACCAGCTCTACAAGGCAGCAGAGCTGGTAGGGACTGGGAATTTCACTCACGCGCAAGGGATATTGGCGCGGCTCAAT CAACAGCTCTCCCCAATTGGGAAGCCCCTTCACAGGGCTGCTTTCTACTTCAAGGAGGCGCTTCAACTGTTACTTATGACGAACAACAACCCGGTCACTG CTCCACCACTGCCTAGAACTCCTACTCCTTTTGATGTCATCTTCAAAATGGGTGCATACAAGGTCTTCTCTGAAGTCTCTCCACTCATCCAGTTTGTAAA CTTCACTTGCAACCAGGCCTTACTCGAGGCTCTGGAGGATTCCGATCGAATCCACATTGTCGACTTCGACATTGGATTTGGTGCTCAATGGGCGTCCTTT ATGCAGGAGCTGCCTCGCAGTAGAGGTCCCCCCTCGTTAAAGATCACAGCTTTTGCATCTCCTTCGACCCACCACCCGATCGAGCTTGGTCTTATGCGCG AAAACTTGACTCAGTTCGCCAACGAGATTGGTGTGAGTTTCGAACTCGACGTGGTCAACTTAGATTCTCTAGACCAGAATTGCTTCTCGCTGCCTATATT CCGAGCTAGCGAAAACGAGGCTGTTGCTGTGAACTTCCCTATCTGGTCATGTTCGCATCAGCCATCTGCATTGCCTTCTTTGCTACGTCTGGTTAAGCAG CTTTCTCCAAAGATTGTCGTGTCTTTGGATCGTGGATGCGATAGGAGCGATCTCCCCTTCCCTCAACACATTCTCCATGCTCTCCAGTCATACATTCATC TGTTTGAATCGTTGGATGCTGTCAATGTGACTAGTGATGCTCTGAACAAGATTGAGAGGTTTTTGCTTCAGCCTAGGATCGAAAGCACCGTGTTGGGGCG TCTTCGTGCACCGGACAAGATGCCTAATTGGAAGACGATCTTCGCCTCTGCCGGGTTTTCTCCCGTGACATTTAGCAATTTCACCGAGACTCAGGCCGAG TGTGTTTTGAAAAGGACTCAAGTGAGGGGATTTCACGTTGAGAAGCGACACGCCTCCCTCGTCCTTTGCTGGCAGCGTCGAGAACTCATATCGGCATCAG CTTGGAGGTGCTGA
AA sequence Show only first row Show all	>Lus10028934 pacid=23177130 polypeptide=Lus10028934 locus=Lus10028934.g ID=Lus10028934.BGIv1.0 annot-version=v1.0 MPFHLEGKGGLDTASIFSQQEAWKLQHHNNKQEVNSFTEPISVLHMRRSPSPPTSASTLSSSFNGTAGGTTPTAGGDKALNNNDRKDEWANELQPIPTGG LDIVSSVGERCGLGLYDWENMLSEPTQEQSLLRWISGGDVDDSSFGLKHLLQSNNNNNGSGNNNPLDFDGIVDQGHGGFEGIGGIGGSIGSNLGAFPASG FVGNNGRIAQAAAGLVSPSSSGSGLVNFKANNTLVNLPAAASLPSAMLYHPQQQVDALDEKPPHILMNMNPHQQPAPNFFFPLPFPQQDHYHQQQPQPKR QNSGGNNIMEPNIPPMLPKLPFSDPGDDIFLRKQQQHQQFPPGVPFLLHQGIQPPLMGKDDPGGGGQQQQHALLDQLYKAAELVGTGNFTHAQGILARLN QQLSPIGKPLHRAAFYFKEALQLLLMTNNNPVTAPPLPRTPTPFDVIFKMGAYKVFSEVSPLIQFVNFTCNQALLEALEDSDRIHIVDFDIGFGAQWASF MQELPRSRGPPSLKITAFASPSTHHPIELGLMRENLTQFANEIGVSFELDVVNLDSLDQNCFSLPIFRASENEAVAVNFPIWSCSHQPSALPSLLRLVKQ LSPKIVVSLDRGCDRSDLPFPQHILHALQSYIHLFESLDAVNVTSDALNKIERFLLQPRIESTVLGRLRAPDKMPNWKTIFASAGFSPVTFSNFTETQAE CVLKRTQVRGFHVEKRHASLVLCWQRRELISASAWRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Lus10028934 [exp]	0	1
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Lus10004353 [exp]	1.0	0.9678
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10019281 [exp]	2.0	0.8396
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10011542 [exp]	4.5	0.8266
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10027304 [exp]	9.9	0.8439
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10007291 [exp]	11.0	0.7772
AT3G15380			Plasma-membrane choline transp...		Lus10036620 [exp]	16.9	0.8202
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10030045 [exp]	17.7	0.8426
AT5G60370			unknown protein		Lus10038466 [exp]	22.5	0.7624
AT4G24630			DHHC-type zinc finger family p...		Lus10028737 [exp]	25.1	0.7667
AT5G06750			Protein phosphatase 2C family ...		Lus10021056 [exp]	25.7	0.7802

Compare expression of checked genes

Lus10028934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.