Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37260 173 / 9e-53 MYB ATMYB73 myb domain protein 73 (.1) AT5G67300 167 / 9e-51 MYB ATMYB44, AtMYBr1 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) AT2G23290 167 / 1e-50 MYB ATMYB70 myb domain protein 70 (.1) AT3G50060 167 / 2e-50 MYB ATMYB77 myb domain protein 77 (.1) AT3G55730 159 / 2e-46 MYB ATMYB109 myb domain protein 109 (.1) AT3G09230 153 / 2e-44 MYB ATMYB1 myb domain protein 1 (.1) AT2G39880 146 / 5e-42 MYB ATMYB25 myb domain protein 25 (.1) AT5G17800 129 / 6e-36 MYB ATMYB56 myb domain protein 56 (.1) AT4G33450 127 / 1e-35 MYB ATMYB69 myb domain protein 69 (.1) AT1G73410 127 / 1e-35 MYB AtMYB54, BW54, MYB54 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 54, myb domain protein 54 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007503 [exp] 355 / 5e-125 AT4G37260 182 / 2e-56 myb domain protein 73 (.1) Lus10040940 [exp] 251 / 2e-84 AT4G37260 176 / 2e-54 myb domain protein 73 (.1) Lus10014103 [exp] 183 / 1e-57 AT4G37260 213 / 2e-68 myb domain protein 73 (.1) Lus10010238 [exp] 177 / 3e-54 AT4G37260 271 / 4e-90 myb domain protein 73 (.1) Lus10010055 [exp] 176 / 1e-53 AT4G37260 259 / 2e-85 myb domain protein 73 (.1) Lus10021762 [exp] 169 / 8e-52 AT2G23290 179 / 8e-55 myb domain protein 70 (.1) Lus10032764 [exp] 164 / 9e-50 AT4G37260 182 / 5e-56 myb domain protein 73 (.1) Lus10010260 [exp] 166 / 1e-49 AT5G67300 288 / 5e-96 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) Lus10030336 [exp] 166 / 1e-49 AT4G37260 290 / 1e-96 myb domain protein 73 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G070900 [exp] 221 / 3e-72 AT4G37260 173 / 2e-52 myb domain protein 73 (.1) Potri.007G048900 [exp] 178 / 1e-54 AT4G37260 273 / 2e-90 myb domain protein 73 (.1) Potri.005G142600 [exp] 178 / 3e-54 AT4G37260 246 / 7e-80 myb domain protein 73 (.1) Potri.002G122600 [exp] 174 / 3e-53 AT4G37260 258 / 6e-85 myb domain protein 73 (.1) Potri.002G128900 [exp] 172 / 3e-53 AT4G37260 179 / 2e-55 myb domain protein 73 (.1) Potri.014G035100 [exp] 172 / 4e-53 AT4G37260 183 / 1e-56 myb domain protein 73 (.1) Potri.014G022500 [exp] 172 / 1e-52 AT4G37260 226 / 3e-72 myb domain protein 73 (.1) Potri.001G300200 [exp] 168 / 8e-52 AT4G37260 203 / 1e-64 myb domain protein 73 (.1) Potri.009G096000 [exp] 167 / 4e-51 AT4G37260 222 / 1e-71 myb domain protein 73 (.1) Potri.010G195000 [exp] 159 / 3e-46 AT3G55730 295 / 7e-97 myb domain protein 109 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10028979 pacid=23177312 polypeptide=Lus10028979 locus=Lus10028979.g ID=Lus10028979.BGIv1.0 annot-version=v1.0 ATGGAACCGCCGTCTTCTTTCACCGCCGATCGGATCAAAGGCTCGTGGAGCCCGCAGGAGGACGCAGCACTCATCAAGCTCGTCCAGCAGCACGGACCGA GGAACTGGTCCATGATCAGCTCAGGAATCCCCGGCCGCTCCGGCAAGTCATGCAGGCTACGGTGGTGCAACCAGCTCTCTCCCGACGTCCAGCACCGCCC CTTCACCCCCGCCGAGGACGCCCTCATCGTCCGGGCCCACTCCCTCCACGGCAACAAGTGGGCCACCATCTCCCGCCTTCTCCCTGGGAGGACCGACAAC GCGATTAAAAACCACTGGAACTCCACGCTCCGCCGCAAACGTGCCGCTAGGGATGATCGGGATTTTTCGCCGGCGGAGCCTGTGCATTCGGGCTCGAATC TGGCCGATTCGGAGGGGGAATCGGGGAGTAACAAGAAGCTCTGCTTACGTCATGATGATAATGATACTGGTAATGGAGGCGAGGGGGAGATTATTACTAC GTTGTTGACGCTGTCTCCACCGGGAGCGGAAGAAGATGTGACGGCGGCGGATAGCGGCGGAAAGGAAAAGTGGTTGAAGGCGGCGGCGGGGATTGGTGAG CAGGAGAGTTGTTTGTTGGAGATCATGCAGAGGATGATCGCCGAGGAAGTTAGGAGTTACATTGATAGATTGAGAGCGCAAGATGGGCTTAATCTTGGGT CTAATCCAGAGCCTGTGGGCCATCATGATCCATGA
AA sequence Show only first row Show all	>Lus10028979 pacid=23177312 polypeptide=Lus10028979 locus=Lus10028979.g ID=Lus10028979.BGIv1.0 annot-version=v1.0 MEPPSSFTADRIKGSWSPQEDAALIKLVQQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPDVQHRPFTPAEDALIVRAHSLHGNKWATISRLLPGRTDN AIKNHWNSTLRRKRAARDDRDFSPAEPVHSGSNLADSEGESGSNKKLCLRHDDNDTGNGGEGEIITTLLTLSPPGAEEDVTAADSGGKEKWLKAAAGIGE QESCLLEIMQRMIAEEVRSYIDRLRAQDGLNLGSNPEPVGHHDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10028979 [exp]	0	1
AT3G53940			Mitochondrial substrate carrie...		Lus10012658 [exp]	2.8	0.8664
AT5G61340			unknown protein		Lus10003483 [exp]	7.4	0.8254
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10033882 [exp]	10.7	0.8563
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10035628 [exp]	11.4	0.8473
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10024785 [exp]	11.5	0.7536
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Lus10017952 [exp]	12.2	0.8198
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10028116 [exp]	13.0	0.7990
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10035312 [exp]	14.4	0.8132
AT1G03390			HXXXD-type acyl-transferase fa...		Lus10033079 [exp]	14.5	0.8094
					Lus10009357 [exp]	15.5	0.7778

Compare expression of checked genes

Lus10028979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.