Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40540 528 / 4e-178 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT1G70300 488 / 1e-162 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT5G14880 484 / 4e-161 Potassium transporter family protein (.1) AT2G30070 385 / 9e-124 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT4G23640 345 / 1e-107 ATKT3, KUP4, TRH1 TINY ROOT HAIR 1, Potassium transporter family protein (.1) AT4G13420 333 / 5e-103 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT3G02050 326 / 2e-100 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) AT1G60160 313 / 4e-95 Potassium transporter family protein (.1) AT2G35060 302 / 2e-91 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT1G31120 296 / 6e-89 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012888 [exp] 1183 / 0 AT5G14880 566 / 0.0 Potassium transporter family protein (.1) Lus10014531 [exp] 766 / 0 AT5G14880 1098 / 0.0 Potassium transporter family protein (.1) Lus10032154 [exp] 723 / 0 AT2G30070 562 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Lus10034215 [exp] 701 / 0 AT2G40540 1239 / 0.0 potassium transporter 2 (.1.2) Lus10030539 [exp] 624 / 0 AT2G40540 1245 / 0.0 potassium transporter 2 (.1.2) Lus10024709 [exp] 548 / 0 AT3G02050 636 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Lus10032327 [exp] 547 / 0 AT2G30070 635 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Lus10030857 [exp] 496 / 6e-166 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030632 [exp] 496 / 8e-166 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G056500 [exp] 554 / 0 AT2G40540 1272 / 0.0 potassium transporter 2 (.1.2) Potri.013G083400 [exp] 542 / 0 AT2G40540 1225 / 0.0 potassium transporter 2 (.1.2) Potri.010G094300 [exp] 485 / 2e-161 AT1G70300 1228 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.008G147400 [exp] 480 / 1e-159 AT1G70300 1221 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.009G073500 [exp] 405 / 1e-130 AT2G30070 1092 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.014G144900 [exp] 368 / 2e-116 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.003G148200 [exp] 357 / 2e-112 AT2G30070 831 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.002G237500 [exp] 354 / 2e-110 AT3G02050 1179 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.005G095900 [exp] 350 / 5e-110 AT2G30070 769 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.003G133900 [exp] 348 / 7e-109 AT4G23640 947 / 0.0 TINY ROOT HAIR 1, Potassium transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF02705 [flax] [poplar] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Lus10029050 pacid=23151797 polypeptide=Lus10029050 locus=Lus10029050.g ID=Lus10029050.BGIv1.0 annot-version=v1.0 ATGTCTCAGCCTGATCGTTTCAGAGTAGGTGCCATGGATTTTAGGTTCTCCAAGATGTCAGAGGGTCCAAAGAAGGATTCGTGGAAGACGCTGATGCTGT TGGCATATCAGAGCCTTGGAGTAGTCTATGGGGACCTTGGCATATCTCCACTGTATGTTTACAAGAGCACATTTGCGGACGACATCCACCATTCAGAAAG CAACGACGAGATTTACGGTGTTCTATCGTTTGTGTTCTGGACACTCACTTTGGTCCCCTTGTTCAAGTATGTTTTCATTGTTCTCAGGGGTGATGATAAC GGGGAGGGTGGTACTTTCGCATTGTACTCTCTAATCTGCCGACACGCCAAAGTTAACCTTCTACCAAATAGGCAGGTTTCGGATGAATCTCTGTCCACAT ATATCACAGAAGAACCCCCAGAGAAGAAAAGTGTCTGCATGAAGTCGTCACTCGAGAAGCATAAGGGTTTGCACACTGCATTGTTGATCTTGGTTCTTCT TGGCACTTGTATGGTAATTGGGGATGGACTCCTCACTCCAGCAATTTCGGTTTTCACTGCAGTGTCTGGACTTGAGTTGTCCATGGACAAGCATCAATAT GCAGTTATTCCAATTACATGCTTCACCTTGGTGTGTCTTTTTTCACTGCAACATTATGGAACGCATCGTGTCGGGTTCTTATTTGCACCAATCATCTTGT TGTGGCTATTCTGCATCAGTGCCCTTGGCATCTACAATATATTCCGCTGGAACATGCATGTTTATAAAGCTCTTTCCCCATACTACATGTACAAGTTCTT GAAGAAAACAAAGAAATCTGGTTGGATGTCTTTGGGAGGGATATTATTGTGCATAACAGGATCAGAAGCAATGTTTGCTGATCTTGGACACTTCTCATAC ACTGCAATTCAGGTTGCATTCAGCTTTCTGGTTTATCCAGCGCTTATTCTAGCATACATGGGTCAAGCTGCTTATCTCTCACAGCATCACGGTCTTGCTA GTGACATTAGCTTCTATATTTTTGTTCCAGGATTGGCTGTGATGACTGTGATGCTGGTTACAACTTGTCTTACTTCCTTAGTCATTGTGCTCTGCTGGCA CAAGCCACCGATACTCGCGCTCGGCTTTCTGCTTTTCTTCGGCTCGGTCGAGTTGCTATACTTCTCAGCCTCGCTAACCAAGTTCAAAGAAGGTGCCTGG CTCCCCATGCTCATGGCCCTAATCCTCGTCAGCATCATGCTTATCTGGCATTATGCCACCGTGAAAAAGTACGAGTATGACTTGCACAACAAGGTATCAC TAGACTGGCTTTTAGCTCTGGGGCCAAGTTTGGGAGTTGCAAGAGTCCCCGGCATTGGTTTAGTTTTCAGTGATCTCACCTCAGGTATACCGGCGAACTT CTCTCGATTCGTAACAAATCTCCCTGCCTACCACCGGGTCGTAGTTTTCGTGTGCGTCAAGTCAGTCACTGTCCCCCATGTTCCACCGGCTGAGAGGTAT CTTGTCGGACGTGTTGGTCCACCCGAGCATCGTTCATACAGGTGCATTATTCGTTATGGATACCGTGATGTTCACCAGGATGTTCACTCATTCGAGTCTG AGCTTGTTGCCAAGCTGGCAGACTTCATCCGGTATGACTGGCAACGAGCGAACGGCCAATTCTCTCCCGACGATGATGATGATGCGGTCCAATCAGTAGC TTCATCGAACGAGTGCAGGCTGACTGTGATAGGAACCCGGTCGTTTACTCGAAACCCAGCTTACGAGGTGGACGACACCGTGCAGGCAGCCAGTGTTTCA GTAGGTGAAAGGACGGCAGCTAGCTTGAGTGAAGTGATAGAGATGGAACCGGTCGATCGAGCGGTTAGGAGAGTGAGGTTTGCAGTCGATGATGAGTCGT CCGAAACATATCAAACCAATACTGACATTCAGATGGAAGAAGAACTGGGGGATCTGCTATCAGCGCAAGAGTCCGGTACTGCGTTCATACTGGGGCATTC TCATGTCCGAACTAAACAAGGGTCGTCGATCTGGAAGCGATTCGCCATCGATTTCGGGTATAACTTCTTGAGAAGGAACTGCAGGGGACCTGATGTTTCG CTCAAAGTTCCACCAGTGTCACTTTTGGAAGTAGGAATGGTGTATGTTGTATAA
AA sequence Show only first row Show all	>Lus10029050 pacid=23151797 polypeptide=Lus10029050 locus=Lus10029050.g ID=Lus10029050.BGIv1.0 annot-version=v1.0 MSQPDRFRVGAMDFRFSKMSEGPKKDSWKTLMLLAYQSLGVVYGDLGISPLYVYKSTFADDIHHSESNDEIYGVLSFVFWTLTLVPLFKYVFIVLRGDDN GEGGTFALYSLICRHAKVNLLPNRQVSDESLSTYITEEPPEKKSVCMKSSLEKHKGLHTALLILVLLGTCMVIGDGLLTPAISVFTAVSGLELSMDKHQY AVIPITCFTLVCLFSLQHYGTHRVGFLFAPIILLWLFCISALGIYNIFRWNMHVYKALSPYYMYKFLKKTKKSGWMSLGGILLCITGSEAMFADLGHFSY TAIQVAFSFLVYPALILAYMGQAAYLSQHHGLASDISFYIFVPGLAVMTVMLVTTCLTSLVIVLCWHKPPILALGFLLFFGSVELLYFSASLTKFKEGAW LPMLMALILVSIMLIWHYATVKKYEYDLHNKVSLDWLLALGPSLGVARVPGIGLVFSDLTSGIPANFSRFVTNLPAYHRVVVFVCVKSVTVPHVPPAERY LVGRVGPPEHRSYRCIIRYGYRDVHQDVHSFESELVAKLADFIRYDWQRANGQFSPDDDDDAVQSVASSNECRLTVIGTRSFTRNPAYEVDDTVQAASVS VGERTAASLSEVIEMEPVDRAVRRVRFAVDDESSETYQTNTDIQMEEELGDLLSAQESGTAFILGHSHVRTKQGSSIWKRFAIDFGYNFLRRNCRGPDVS LKVPPVSLLEVGMVYVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Lus10029050 [exp]	0	1
AT3G22540			Protein of unknown function (D...		Lus10006107 [exp]	8.1	0.6579
AT3G60320			Protein of unknown function (D...		Lus10028207 [exp]	77.3	0.5678

Compare expression of checked genes

Lus10029050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.