Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10750 638 / 0 Protein of Unknown Function (DUF239) (.1) AT1G70550 621 / 0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G23340 619 / 0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT5G50150 603 / 0 Protein of Unknown Function (DUF239) (.1) AT5G18460 471 / 7e-164 Protein of Unknown Function (DUF239) (.1) AT3G13510 468 / 3e-163 Protein of Unknown Function (DUF239) (.1) AT1G55360 463 / 4e-161 Protein of Unknown Function (DUF239) (.1) AT5G56530 440 / 4e-152 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT2G44210 410 / 3e-140 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT2G44220 374 / 2e-126 Protein of Unknown Function (DUF239) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013046 [exp] 865 / 0 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10001248 [exp] 556 / 0 AT5G50150 580 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10027683 [exp] 523 / 0 AT5G50150 575 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10039949 [exp] 523 / 0 AT5G50150 575 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10042092 [exp] 516 / 0 AT5G50150 540 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10004766 [exp] 469 / 7e-163 AT5G18460 603 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10003100 [exp] 455 / 7e-157 AT5G18460 593 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10013410 [exp] 449 / 2e-155 AT3G13510 708 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10010315 [exp] 377 / 6e-128 AT3G13510 626 / 0.0 Protein of Unknown Function (DUF239) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G044300 [exp] 704 / 0 AT1G70550 664 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.008G188000 [exp] 697 / 0 AT1G70550 661 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.015G080300 [exp] 603 / 0 AT5G50150 637 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.012G088300 [exp] 596 / 0 AT5G50150 592 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.013G050100 [exp] 473 / 8e-165 AT5G18460 635 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.019G024100 [exp] 469 / 3e-163 AT5G18460 622 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.003G221200 [exp] 456 / 3e-158 AT1G55360 716 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G003800 [exp] 448 / 4e-155 AT1G55360 689 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G233000 [exp] 438 / 5e-151 AT3G13510 621 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.006G233600 [exp] 224 / 3e-68 AT5G25950 310 / 3e-102 Protein of Unknown Function (DUF239) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03080 [flax] [poplar] Neprosin Neprosin
Representative CDS sequence Show only first row Show all	>Lus10029116 pacid=23151692 polypeptide=Lus10029116 locus=Lus10029116.g ID=Lus10029116.BGIv1.0 annot-version=v1.0 ATGGTGGGTTCAGTGCACTGTATCGAAAGCTGTACTGGAAGCTTCTTCAGCCGCCATTGGTGTTCTGTACTCGATCTCAGAACACGACAACAGGAAGAAG ATCAAGTAGCTCACCAACAACAATGTCGGCTCCAACAAACGAATAGAACAACAGCAGAAACGGAAGAAGAAGAAGAAGAAACAAAAAACCCACAATCCAA ATCATCGGAAGAATCCATGGAAGATGATTCTACCACCAAATTTTGCCGGATCAGCACAAACAAAACATCCCCTGTTTTCTTCTCCCTCTGTTTCTTCCTC CTCCTCTGCCTCGCCAATTCCTCCTCCGACCGGACCGGATTCAACCGAACCGGTCAATCTCTCCACCCAGGTGAGCAACTACAACGGCTCAAATTCGTCA AGGAACGTCTCCACAAGATCAACAAGCCTCCCGTCAAGTCAATTCAGAGTCCAGACGGGGATATAATCGACTGCATCCCATCCCACCAGCAACCTGCTTT CGACCATCCTCAATTGGAAGGACAGAAGCCGTTGGATCCGCCGGAGAGGCCGGAGGGCCACAATCCAACGGGTGACGTGGCGGTGAGTTTCCAGGCGTGG AGCATGTCGGGGGACACGTGTCCGGATGGTACAATTCCGATCAGGAGGACGACGGAGGATGACGTGCTGAGAGCTAGCAGCTTGAATGCGTTCGGGAAGA AGCTCCGGAGACATGTTCGTCGAGATACCAACAGTAATGGCCATGAGCATGCAGTGGGGTATGTGAGCGGAGATCAATACTACGGGGCGAAGGCGAGCAT CAACGTGTGGGCGCCGCAAGTGACGAACCAATACGAGTTTAGCCTGTCGCAAATGTGGGTGATTTCTGGATCTTTTGGGGACGACCTTAACACAATCGAA GCTGGTTGGCAGGTTAGTCCTGAATTGTATGGGGACAACTATCCTAGGTTCTTCACATATTGGACTTCGGATGCTTATCAAGCAACTGGATGCTACAATT TACTTTGCTCAGGATTCATCCAGACCAACAATAGAATCGCGATCGGGGCAGCCATTTCCCCGACTTCTGCCTACACTGGTGGCCAGTTTGACATTAGCTT GTTGATTTGGAAGGACCCGAAACACGGGAACTGGTGGCTGGAATTCGGGTCGGGTGTCCTGGTGGGTTACTGGCCAGCATTCCTGTTCACGCATTTGAGA GACCACGCAACCATGGTGCAATATGGAGGCGAAGTGGTGAACTCGAGAGCATCGGGATTCCACACATCGACACAGATGGGGAGTGGCCATTTTGCAGGGG AAGGGGTTTGGAAAGCATCCTACTTCAGAAACTTGCAAGTTGTGGATTGGGACAACAACTTGGTGCCATTGTCAAACCTCAAGGTGTTGGCTGACCACCC AAATTGCTATGACATCCAAGGTGGGATCAACAAGGTTTGGGGGAATTACTTTTACTATGGTGGTCCTGGTAGAAACATCAGATGTCCCTAG
AA sequence Show only first row Show all	>Lus10029116 pacid=23151692 polypeptide=Lus10029116 locus=Lus10029116.g ID=Lus10029116.BGIv1.0 annot-version=v1.0 MVGSVHCIESCTGSFFSRHWCSVLDLRTRQQEEDQVAHQQQCRLQQTNRTTAETEEEEEETKNPQSKSSEESMEDDSTTKFCRISTNKTSPVFFSLCFFL LLCLANSSSDRTGFNRTGQSLHPGEQLQRLKFVKERLHKINKPPVKSIQSPDGDIIDCIPSHQQPAFDHPQLEGQKPLDPPERPEGHNPTGDVAVSFQAW SMSGDTCPDGTIPIRRTTEDDVLRASSLNAFGKKLRRHVRRDTNSNGHEHAVGYVSGDQYYGAKASINVWAPQVTNQYEFSLSQMWVISGSFGDDLNTIE AGWQVSPELYGDNYPRFFTYWTSDAYQATGCYNLLCSGFIQTNNRIAIGAAISPTSAYTGGQFDISLLIWKDPKHGNWWLEFGSGVLVGYWPAFLFTHLR DHATMVQYGGEVVNSRASGFHTSTQMGSGHFAGEGVWKASYFRNLQVVDWDNNLVPLSNLKVLADHPNCYDIQGGINKVWGNYFYYGGPGRNIRCP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10750			Protein of Unknown Function (D...		Lus10029116 [exp]	0	1
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10004913 [exp]	10.5	0.6939
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10032750 [exp]	12.1	0.7343
AT5G22400			Rho GTPase activating protein ...		Lus10004864 [exp]	13.2	0.7894
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10034021 [exp]	17.3	0.7286
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10004562 [exp]	22.8	0.6673
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10031275 [exp]	27.9	0.6869
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10035756 [exp]	33.0	0.6793
AT4G34660			SH3 domain-containing protein ...		Lus10017501 [exp]	34.0	0.6765
AT3G60600		(AT)VAP, (AT)VA...	VAMP/SYNAPTOBREVIN-ASSOCIATED ...		Lus10028937 [exp]	34.4	0.7076
AT5G11540			D-arabinono-1,4-lactone oxidas...		Lus10038620 [exp]	35.5	0.7067

Compare expression of checked genes

Lus10029116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.