Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60160 506 / 8e-168 Potassium transporter family protein (.1) AT4G33530 376 / 7e-118 KUP5 K+ uptake permease 5, K+ uptake permease 5 (.1) AT5G09400 371 / 5e-116 KUP7 K+ uptake permease 7, K+ uptake permease 7 (.1) AT4G13420 314 / 3e-95 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT2G40540 270 / 7e-79 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT2G35060 260 / 4e-75 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT1G31120 255 / 2e-73 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT2G30070 253 / 4e-73 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT5G14880 253 / 1e-72 Potassium transporter family protein (.1) AT1G70300 251 / 6e-72 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012993 [exp] 662 / 0 AT1G60160 1237 / 0.0 Potassium transporter family protein (.1) Lus10014531 [exp] 500 / 1e-166 AT5G14880 1098 / 0.0 Potassium transporter family protein (.1) Lus10012888 [exp] 468 / 2e-154 AT5G14880 566 / 0.0 Potassium transporter family protein (.1) Lus10029050 [exp] 450 / 1e-147 AT2G40540 563 / 0.0 potassium transporter 2 (.1.2) Lus10036222 [exp] 446 / 3e-146 AT2G35060 812 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10024709 [exp] 440 / 8e-144 AT3G02050 636 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Lus10032327 [exp] 439 / 3e-142 AT2G30070 635 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Lus10003402 [exp] 404 / 5e-128 AT5G09400 1296 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Lus10036160 [exp] 399 / 1e-127 AT5G09400 1204 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G094400 [exp] 542 / 0 AT1G60160 1209 / 0.0 Potassium transporter family protein (.1) Potri.003G023900 [exp] 387 / 4e-122 AT5G09400 1120 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Potri.001G205500 [exp] 357 / 1e-110 AT5G09400 1081 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Potri.001G069799 [exp] 330 / 4e-102 AT4G13420 845 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G045200 [exp] 321 / 2e-97 AT4G13420 978 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G069650 [exp] 315 / 2e-95 AT4G13420 951 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.014G132500 [exp] 300 / 3e-90 AT4G13420 852 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G123800 [exp] 272 / 2e-79 AT2G35060 1149 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.003G109700 [exp] 271 / 6e-79 AT2G35060 1155 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.019G056500 [exp] 269 / 2e-78 AT2G40540 1272 / 0.0 potassium transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF02705 [flax] [poplar] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Lus10029172 pacid=23151799 polypeptide=Lus10029172 locus=Lus10029172.g ID=Lus10029172.BGIv1.0 annot-version=v1.0 ATGGAGGAGGAAGGAGGAGATAGGATTGAAGAGTGCAGTGAGAGGCTGCTGGAGAGTGGCAGCAGGAAAGGGAGTGGGGGAGGGGACTGGATATGGGTTG ATGGAAGTGAAGTTGATTCAGATTCTCCTCCTCTTTCTTTGCTTGATGGCAGTAATGATGGAAGTAAATCACAAGGAAGACCAGGAGGAGGGTATGGTGG GACTATGAGGAGGAGGTTGGTGAAGAAGCCCAAGAGAGTTGACTCTTTCGATGTTGAGTCCATGGAGATTGCTGGTGCTCACACCCACCACAATAAGGAA GTCTCAACTTTGGCAACTATTGGATTGGCCTTTCAAACGCTTGGAGTGGTCTATGGCGACATGGGAACAAGCCCTTTATATGTGTTTACTGATGTATTCA GTAAGGTTCCCATCGAGTCTGAAATTGATGTGTTGGGAGCTTTATCAACAGTTATGTACACAATAGCTCTCATTCCCTTAGCCAAATATGTCTTTGTGGT GTTGAAAGCAAATGACAATGGGGAAGGAGGAACGTTTGCTTTGTACTCACTGATCTCTAGATATGCAAAGGTTAACATGCTGCCGAATCGCCAGCCAGCA GACGAACAGATATCGAGTTTCAAGCTGAAGTTGCCTACCCCGGAGCTCGAAAGGGCTTTGAGCATTAAGGAACTCCTGGAAACAAGACCCTTCTTGAAAA CACTTCTGTTGCTTTTGGTGCTTATGGGGACTTCCATGGTTATAGGAGATGGTATCCTTACCCCTGCGATATCAGTGATGTCTGCTACAAGTGGCCTGCA AGGTGAAGTGTCTGGATTTGGTACAAGTAGGTATCACATCATGTTGCCCTTGGTTGCAGATGCTGTGGTTGCCGTTTCAATCGTTATCCTGTTGGCCTTG TTTGGCATACAACGGTTTGGGACAGGCAAAGTCGGCATCATGTTTGCTCCAGTGCTTGGTTTATGGTTCTTCTCACTGGGTGCCATTGGAATATTCAATC TAGTGGCGTATGATATCTCTGTACTGAGAGCACTCAATCCAGCTTATATCTATTTCTTCTTCCAGAAGAATGGCGTTGCTGCATGGTCAGCTCTTGGTGG CTGTGTATTGTGCATTACAGGAGCTGAAGCTATGTTTGCAGATTTGGGACATTTCTCTGTGAAATCCATACAAATTGCTTTCACATTTGTGGTGTTCCCT TGTCTTCTCTTGGCGTACTTGGGCCAGGCTGCATACTTAATGAAACATCCTGATTCCGCTAGCAGAATCTTCTATGATTCAGTTCCAGTTGCCATCTTCC GGAGCACCACAGATATCGCCAATGCCTATGGCATTGCTGAAGTTGGAGTGATGCTTGTGACCACCACTCTAGTCACCTTAGTTATGGTTCTCATATGGCA GACTAACTTAGCTCTTGCCTTGTTGTTTCCTCTTGTATTTGGATCAATAGAGCTCATCTATCTGTCAGCAGTTCTGTCGAAACTTTTAGAAGGCGGCTGG CTCCCTCTAGCTTTTGCCTCGTTCTTCCTCTGTGTGATGTACATTTGGAACTACGGAAGTGTTCTCAAGTACCGGAGCGAGGTACGGGAGAAGATATCCA TGGACTTGATGCATGAGCTGAGCCCTGACCTCGGCACAGTACGAGTTCCAGGCATCGGATTACTATACAACGAACTCGTGACTGGTGTCCCATCGATCTT TGGACAGTTCCTGCTGAGCCTTCCAGCAATCCAGTCCACCATAGTGTTTGTATGCATCAAGTACGTACCAGTACCAGTAGTCCCTCAGGAGGAAAGGTTC CTGTTCAGAAGAGTCTGCCCACAAGACTACCACATGTTCCGGTGTGTTGCCCGGTACGGTTACAAAGATGTGAGGAAGGAGCATCACCAGTCGTTCGAGC AGCTCCTTGCCGAAAGCCTCGAGAAGTTCCTCCGCAAAGAGGCTCAGGATCTCGCCCTCGAGGCGAACCTCATCAACGAATTCACCGACATGGACAGCAT TTCGGTAGAATCAGCTCCAGCCCCACCAACTGATGACCTGGCAACTCCCTTGTTAATGAACAATGATGAAGCAGGAACTTCAGAACCAGCAGTAGTTGAT CCCTTGGGAAGAACACTATTGCCATCCAGTGTAATGTCGTCGGATGAAGATCCGAGCTTGGAATACGAGCTGACAGCGCTTCGAGAAGCGATGGATTCGG GTTTTACTTATCTTCTGGCTCATGGAGACGTGAGGGCGAAAAAGGAGTCGTTCTTCCTGAAGAAACTGGTGATTAACTACTTGTATGCTTTCCTGAGGAA GAACTGCAGAGCTGGTGCTGCTAATCTGAAAGTGCCTCACATGAATATCTTGCGGGTGAGAATGACCTACATGGTATGA
AA sequence Show only first row Show all	>Lus10029172 pacid=23151799 polypeptide=Lus10029172 locus=Lus10029172.g ID=Lus10029172.BGIv1.0 annot-version=v1.0 MEEEGGDRIEECSERLLESGSRKGSGGGDWIWVDGSEVDSDSPPLSLLDGSNDGSKSQGRPGGGYGGTMRRRLVKKPKRVDSFDVESMEIAGAHTHHNKE VSTLATIGLAFQTLGVVYGDMGTSPLYVFTDVFSKVPIESEIDVLGALSTVMYTIALIPLAKYVFVVLKANDNGEGGTFALYSLISRYAKVNMLPNRQPA DEQISSFKLKLPTPELERALSIKELLETRPFLKTLLLLLVLMGTSMVIGDGILTPAISVMSATSGLQGEVSGFGTSRYHIMLPLVADAVVAVSIVILLAL FGIQRFGTGKVGIMFAPVLGLWFFSLGAIGIFNLVAYDISVLRALNPAYIYFFFQKNGVAAWSALGGCVLCITGAEAMFADLGHFSVKSIQIAFTFVVFP CLLLAYLGQAAYLMKHPDSASRIFYDSVPVAIFRSTTDIANAYGIAEVGVMLVTTTLVTLVMVLIWQTNLALALLFPLVFGSIELIYLSAVLSKLLEGGW LPLAFASFFLCVMYIWNYGSVLKYRSEVREKISMDLMHELSPDLGTVRVPGIGLLYNELVTGVPSIFGQFLLSLPAIQSTIVFVCIKYVPVPVVPQEERF LFRRVCPQDYHMFRCVARYGYKDVRKEHHQSFEQLLAESLEKFLRKEAQDLALEANLINEFTDMDSISVESAPAPPTDDLATPLLMNNDEAGTSEPAVVD PLGRTLLPSSVMSSDEDPSLEYELTALREAMDSGFTYLLAHGDVRAKKESFFLKKLVINYLYAFLRKNCRAGAANLKVPHMNILRVRMTYMV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Lus10029172 [exp]	0	1
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Lus10003039 [exp]	4.7	0.9306
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10029252 [exp]	10.1	0.9196
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10016388 [exp]	12.8	0.9184
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	13.2	0.9192
AT1G78780			pathogenesis-related family pr...		Lus10039018 [exp]	14.5	0.9157
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10012548 [exp]	14.9	0.9170
AT2G14210	MADS	AGL44, ANR1	ARABIDOPSIS NITRATE REGULATED ...		Lus10028214 [exp]	16.2	0.9118
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10007305 [exp]	16.5	0.9190
AT5G40240			nodulin MtN21 /EamA-like trans...		Lus10039481 [exp]	16.9	0.9060
AT4G27870			Vacuolar iron transporter (VIT...		Lus10022771 [exp]	17.0	0.9100

Compare expression of checked genes

Lus10029172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.