Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70300 249 / 2e-78 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT5G14880 232 / 3e-72 Potassium transporter family protein (.1) AT2G40540 212 / 2e-64 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT2G30070 172 / 2e-50 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT3G02050 154 / 2e-43 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) AT4G23640 146 / 7e-41 ATKT3, KUP4, TRH1 TINY ROOT HAIR 1, Potassium transporter family protein (.1) AT4G13420 146 / 9e-41 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT1G31120 137 / 9e-38 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT2G35060 137 / 9e-38 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT1G60160 137 / 1e-37 Potassium transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012992 [exp] 312 / 8e-103 AT1G70300 1188 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030632 [exp] 270 / 2e-86 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030857 [exp] 269 / 6e-86 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10032154 [exp] 228 / 2e-71 AT2G30070 562 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Lus10014531 [exp] 228 / 6e-71 AT5G14880 1098 / 0.0 Potassium transporter family protein (.1) Lus10029050 [exp] 216 / 2e-66 AT2G40540 563 / 0.0 potassium transporter 2 (.1.2) Lus10012888 [exp] 215 / 4e-66 AT5G14880 566 / 0.0 Potassium transporter family protein (.1) Lus10034215 [exp] 218 / 5e-66 AT2G40540 1239 / 0.0 potassium transporter 2 (.1.2) Lus10030539 [exp] 213 / 6e-65 AT2G40540 1245 / 0.0 potassium transporter 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G147400 [exp] 249 / 2e-78 AT1G70300 1221 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.010G094300 [exp] 246 / 2e-77 AT1G70300 1228 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.013G083400 [exp] 215 / 9e-66 AT2G40540 1225 / 0.0 potassium transporter 2 (.1.2) Potri.019G056500 [exp] 214 / 3e-65 AT2G40540 1272 / 0.0 potassium transporter 2 (.1.2) Potri.009G073500 [exp] 183 / 3e-54 AT2G30070 1092 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.014G144900 [exp] 175 / 4e-51 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.002G237500 [exp] 170 / 3e-49 AT3G02050 1179 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.003G109800 [exp] 153 / 4e-43 AT2G35060 985 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.001G123800 [exp] 151 / 1e-42 AT2G35060 1149 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.003G109700 [exp] 150 / 3e-42 AT2G35060 1155 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF02705 [flax] [poplar] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Lus10029173 pacid=23151689 polypeptide=Lus10029173 locus=Lus10029173.g ID=Lus10029173.BGIv1.0 annot-version=v1.0 ATGGATCTGGAGACTGGTGCTCATCATAAAAATGTCCAGGTTAGAATCGTGGCAATCTTTTTGTTGCAGAAGGAGTCATGGAGGACGGTATTGACACTAG TGTACCAGAGCTTAGGAGTCGTCTATGGCGATTTAAGCATTTCCGCTTTGTACGTTTTCAAGAGCACGTTTGCTGATGAGGACATAATCCATTCTGAGAC CAACGAGATCTTTGGGGTTCTGTCGTTTGTATTCTGGACTCTCACTTTAGTTCCCTTATTGAAGTATGTGTTCATAGTTCTTAGAGCTGATGATAATGGG GAAGGAGGCACATTTGCTCTATTCTCTTTGCTGTATCGACACGCCCGAGTCAACTCGCTCCCCAATCGCCAGGTGGCAGATGGGGAGCTGTCTGAGTATA AGAAGAAGGAGAGCAGTGATGGATCATCAGTTCATCCGGGTTTTCCTTCAGGGTTGAAATCAACGTTGGAGAAGCACAGGGTTCTGCAGAGGATCTTTTT GGCCTTGGTTGGGACTTGTATGGTGATTGGTGATGGCATTCTGACTCCTGCCCTTTCTGGTAAAACATAA
AA sequence Show only first row Show all	>Lus10029173 pacid=23151689 polypeptide=Lus10029173 locus=Lus10029173.g ID=Lus10029173.BGIv1.0 annot-version=v1.0 MDLETGAHHKNVQVRIVAIFLLQKESWRTVLTLVYQSLGVVYGDLSISALYVFKSTFADEDIIHSETNEIFGVLSFVFWTLTLVPLLKYVFIVLRADDNG EGGTFALFSLLYRHARVNSLPNRQVADGELSEYKKKESSDGSSVHPGFPSGLKSTLEKHRVLQRIFLALVGTCMVIGDGILTPALSGKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Lus10029173 [exp]	0	1
AT1G09280			unknown protein		Lus10008045 [exp]	9.2	0.8309
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10025987 [exp]	9.3	0.8909
AT5G27660			Trypsin family protein with PD...		Lus10037815 [exp]	9.5	0.8020
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Lus10029174 [exp]	16.4	0.8351
AT1G03430		AHP5	histidine-containing phosphotr...		Lus10027965 [exp]	16.6	0.8015
AT2G35930		PUB23	plant U-box 23 (.1)		Lus10013352 [exp]	17.3	0.8473
AT1G26870	NAC	FEZ, ANAC009	FEZ, Arabidopsis NAC domain co...		Lus10036749 [exp]	18.7	0.8547
AT5G14000	NAC	ANAC084	NAC domain containing protein ...		Lus10012557 [exp]	25.4	0.8522
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Lus10008097 [exp]	28.1	0.8546
AT2G03760		AtSOT12, AtSOT1...	ARABIDOPSIS THALIANA SULFOTRAN...		Lus10031623 [exp]	32.3	0.8534

Compare expression of checked genes

Lus10029173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.