Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62890 884 / 0 Xanthine/uracil permease family protein (.1.2.3.4) AT1G60030 867 / 0 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) AT5G49990 819 / 0 Xanthine/uracil permease family protein (.1) AT1G10540 785 / 0 ATNAT8 nucleobase-ascorbate transporter 8 (.1) AT1G49960 642 / 0 Xanthine/uracil permease family protein (.1) AT2G34190 597 / 0 Xanthine/uracil permease family protein (.1) AT1G65550 593 / 0 Xanthine/uracil permease family protein (.1) AT2G05760 558 / 0 Xanthine/uracil permease family protein (.1) AT2G26510 469 / 8e-161 PDE135 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) AT5G25420 414 / 2e-141 Xanthine/uracil/vitamin C permease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010707 [exp] 1028 / 0 AT5G62890 916 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10004228 [exp] 869 / 0 AT5G62890 972 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10034125 [exp] 856 / 0 AT1G49960 944 / 0.0 Xanthine/uracil permease family protein (.1) Lus10042138 [exp] 831 / 0 AT5G62890 932 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10043460 [exp] 807 / 0 AT5G62890 892 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10033773 [exp] 612 / 0 AT1G49960 695 / 0.0 Xanthine/uracil permease family protein (.1) Lus10036355 [exp] 607 / 0 AT1G65550 748 / 0.0 Xanthine/uracil permease family protein (.1) Lus10014777 [exp] 602 / 0 AT1G65550 751 / 0.0 Xanthine/uracil permease family protein (.1) Lus10029238 [exp] 599 / 0 AT2G34190 926 / 0.0 Xanthine/uracil permease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G146400 [exp] 925 / 0 AT1G60030 881 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.010G095500 [exp] 913 / 0 AT1G60030 869 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.012G077400 [exp] 859 / 0 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.015G072600 [exp] 857 / 0 AT5G62890 908 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.009G086800 [exp] 658 / 0 AT1G49960 727 / 0.0 Xanthine/uracil permease family protein (.1) Potri.004G058800 [exp] 597 / 0 AT2G34190 927 / 0.0 Xanthine/uracil permease family protein (.1) Potri.011G068200 [exp] 593 / 0 AT2G34190 928 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G157800 [exp] 577 / 0 AT2G05760 930 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G015100 [exp] 565 / 0 AT1G65550 559 / 0.0 Xanthine/uracil permease family protein (.1) Potri.002G129400 [exp] 499 / 6e-173 AT2G26510 751 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00860 [flax] [poplar] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Lus10029191 pacid=23151681 polypeptide=Lus10029191 locus=Lus10029191.g ID=Lus10029191.BGIv1.0 annot-version=v1.0 ATGGCAGGAGGAGGACCAGCGCCGCCGCCAAAGCAAGATGAATTGCTGCCACATCCATCAAAAGATCAGCTCCCAAATGTGTCTTACTGCATTACTAGCC CTCCTCCTTGGCCTGAGGCAATTATACTAGGGTTTCAACACTACTTGGTTATGCTTGGGACAACAGTGCTAATCCCCACTTCACTTGTCCCTCAGATGGG AGGTGGAAATGAGGAGAAAGCAAAGATGATTCAAACATTGCTATTTGTAGCTGGAATCAACACTTTTTTCCAAACCATGTTCGGAACACGGTTGCCTGCT GTGATCGGAGCCTCCTATACTTATCTTCCGACGACCATCTCGATCGTTTTGGCTGGCCGGTATAGTGACATTGTGAACCCTACAGAGAAATTCGAGAGGA TTATGCGTGGAACTCAAGGTGCTCTCATTGTTGCTTCCACCCTCCAAATTGTTGTTGGATTCAGTGGCCTTTGGAGAAATGTTGCAAGGTTCCTGAGTCC ACTGTCTGCTGTCCCTTTGGTTGCCTTGTCCGGTTTCGGGCTCTATGAATTTGGTTTCCCTCTGATTGCGAAATGTGTTGAGATTGGGCTGCCTCAGATC ATCATTCTCATAATCTTTTCCCAGTATATACCTAGCTTGATGAAGGGGGACAAAGCTGTATTCCATCGGTTTGCGGTCCTGTTCTCTGTGGTTATCGTCT GGATATATGCTCACTTGCTCACGGTGGGCGGAGCATACAAAAACGCTGGACCTAAGACTCAACTAAGTTGTAGAACTGACCGTGCTGAAATCATAGGTGC TGCTCCATGGATAAGAGTTCCATATCCATTCCAATGGGGAGCTCCCAGTTTTGATGCCGGAGAGGCCTTTGCAATGATGATGGCTTCTTTTGTTTCTCTT ATAGAGTCAACTGGCGGTTTCATTGCTGTGTCGAGATATGCAAGTGCGACTCCGATGCCTCCTTCTATTCTTAGCCGCGGTGTTGGTTGGCAGGGTGTTG GAATTCTGTTCTCGGGGATATTCGGAACTGGTAATGGATGTGCAGTGTCTGTTGAAAATGCTGGTTTGTTGGCTTTGACAAGAGTTGGCAGCAGAAGGGT GGTTCAGATATCTGCTGGCTTCATGATTTTCTTCTCCATTCTTGGAAAATTCGGAGCTGTCTTTGCATCGATTCCTGCTCCTATCGTTGCAGCCCTATAC TGCCTTTTCTTTGCCTATGTTGGCTCAGCTGGTCTTGGTTACCTCCAGTTCTGCAACTTAAACAGCTTCAGAGTAAAGTTCATCCTAGGCTTCTCCTTCT TCATGGGTCTATCCATCCCACAATACTTCAACGAGTACACCGCAATCAATGGCTACGGTCCAGTCCACACCGGTGCAAGATGGTTCAACGACATGGTCAA CGTGCCATTCTCATCAGAGGCATTCGTGGCCGGGATACTGGCCATGTTCTTGGACGTGACAATGCACAAGAAGGACAATGCGATAAGGAAAGACAGAGGG ATGCATTGGTGGGACAAGTTCAGGTCGTTTAAGACCGACACGAGGAGTGAAGAGTTCTACTCTTTGCCATTCAACCTCAACAAGTTCTTCCCATCTGTTT AG
AA sequence Show only first row Show all	>Lus10029191 pacid=23151681 polypeptide=Lus10029191 locus=Lus10029191.g ID=Lus10029191.BGIv1.0 annot-version=v1.0 MAGGGPAPPPKQDELLPHPSKDQLPNVSYCITSPPPWPEAIILGFQHYLVMLGTTVLIPTSLVPQMGGGNEEKAKMIQTLLFVAGINTFFQTMFGTRLPA VIGASYTYLPTTISIVLAGRYSDIVNPTEKFERIMRGTQGALIVASTLQIVVGFSGLWRNVARFLSPLSAVPLVALSGFGLYEFGFPLIAKCVEIGLPQI IILIIFSQYIPSLMKGDKAVFHRFAVLFSVVIVWIYAHLLTVGGAYKNAGPKTQLSCRTDRAEIIGAAPWIRVPYPFQWGAPSFDAGEAFAMMMASFVSL IESTGGFIAVSRYASATPMPPSILSRGVGWQGVGILFSGIFGTGNGCAVSVENAGLLALTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPAPIVAALY CLFFAYVGSAGLGYLQFCNLNSFRVKFILGFSFFMGLSIPQYFNEYTAINGYGPVHTGARWFNDMVNVPFSSEAFVAGILAMFLDVTMHKKDNAIRKDRG MHWWDKFRSFKTDTRSEEFYSLPFNLNKFFPSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62890			Xanthine/uracil permease famil...		Lus10029191 [exp]	0	1
AT3G52490			Double Clp-N motif-containing ...		Lus10016966 [exp]	1.4	0.9462
AT3G52490			Double Clp-N motif-containing ...		Lus10021291 [exp]	2.0	0.9402
AT4G24180		ATTLP1	THAUMATIN-LIKE PROTEIN 1 (.1)		Lus10017266 [exp]	2.4	0.9337
AT1G73850			Protein of unknown function (D...		Lus10038936 [exp]	3.5	0.9077
AT3G59100		ATGSL11	glucan synthase-like 11 (.1)		Lus10020751 [exp]	3.7	0.9060
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10005229 [exp]	4.0	0.9306
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10005228 [exp]	7.4	0.9155
AT1G73850			Protein of unknown function (D...		Lus10027226 [exp]	8.5	0.8756
AT5G26990			Drought-responsive family prot...		Lus10017956 [exp]	8.5	0.8502
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10037358 [exp]	8.7	0.8859

Compare expression of checked genes

Lus10029191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.