Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34190 927 / 0 Xanthine/uracil permease family protein (.1) AT2G05760 739 / 0 Xanthine/uracil permease family protein (.1) AT5G62890 617 / 0 Xanthine/uracil permease family protein (.1.2.3.4) AT1G60030 605 / 0 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) AT2G26510 602 / 0 PDE135 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) AT1G10540 576 / 0 ATNAT8 nucleobase-ascorbate transporter 8 (.1) AT5G49990 567 / 0 Xanthine/uracil permease family protein (.1) AT1G49960 560 / 0 Xanthine/uracil permease family protein (.1) AT1G65550 538 / 0 Xanthine/uracil permease family protein (.1) AT5G25420 356 / 9e-119 Xanthine/uracil/vitamin C permease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030014 [exp] 764 / 0 AT2G05760 927 / 0.0 Xanthine/uracil permease family protein (.1) Lus10035311 [exp] 714 / 0 AT2G05760 867 / 0.0 Xanthine/uracil permease family protein (.1) Lus10029191 [exp] 627 / 0 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10010707 [exp] 626 / 0 AT5G62890 916 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10004228 [exp] 622 / 0 AT5G62890 972 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10034125 [exp] 605 / 0 AT1G49960 944 / 0.0 Xanthine/uracil permease family protein (.1) Lus10007289 [exp] 601 / 0 AT2G34190 512 / 0.0 Xanthine/uracil permease family protein (.1) Lus10032758 [exp] 593 / 0 AT2G26510 751 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) Lus10002787 [exp] 590 / 0 AT2G26510 748 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G058800 [exp] 976 / 0 AT2G34190 927 / 0.0 Xanthine/uracil permease family protein (.1) Potri.011G068200 [exp] 966 / 0 AT2G34190 928 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G157800 [exp] 760 / 0 AT2G05760 930 / 0.0 Xanthine/uracil permease family protein (.1) Potri.010G095500 [exp] 628 / 0 AT1G60030 869 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.002G129400 [exp] 627 / 0 AT2G26510 751 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) Potri.008G146400 [exp] 622 / 0 AT1G60030 881 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.012G077400 [exp] 621 / 0 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.015G072600 [exp] 619 / 0 AT5G62890 908 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.014G035800 [exp] 613 / 0 AT2G26510 734 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) Potri.009G086800 [exp] 550 / 0 AT1G49960 727 / 0.0 Xanthine/uracil permease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00860 [flax] [poplar] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Lus10029238 pacid=23139773 polypeptide=Lus10029238 locus=Lus10029238.g ID=Lus10029238.BGIv1.0 annot-version=v1.0 ATGGCTGATCCCAAACCAGAAGAGATGACTCACCCACCAATGGACCAGCTTCAGGGTTTGGAGTACTGTATTGACTCAAATCCTTCTTGGGGGGAGACGA TTGCTTTGGGTTTCCAGCATTACATTTTGGCTTTGGGGACTGCGGTTATGATCCCTTCTTTTCTTGTTCCTTTGATGGGTGGTGACAGTGGCGATAAAAT CAGAGTGGTACAGACTTTGCTTTTCATTGAAGGGATCAATTCGCTGATTCAGACTCTGTTTGGAACTCGTCTGCCGACTGTGATTGGTGGCTCTTATGCC TTTATGGTCCCGATCATTTCCATAATTCATGATCCTGCATTGACCAGGATAGAGGATGATCATTTGAGATTTCTTAGCACAATGAGAGCTGTACAAGGTG CTTTGATAGTGGCATCAAGCATTCAGATAATTCTGGGATTCAGTCAGTTGTGGGCCATTTGTTCCAGGTTCTTCAGCCCACTTGGAATGGTTCCTGTAAT ATCCTTGATGGGTTTTGGACTATTTGACAGAGGCTTCCCTGTGGTTGGACACTGTGTGGAATATGGCATTCCAATGCTCATTCTGTTCATTGTGTTCTCT CAGTACTTGAAGAGCTTCAGTTTCAGACAATTGCCAGTACTAGAGCGGTTTGCTTTGCTGATAACCGTAACAGTAATATGGGCGTATGCACATCTCTTGA CGGTTGGTGGTGCATATAGACATCGTCCGGACCTTACTCAAGTGAACTGCCGGACCGACAGGGCTTACCTCATCTCATCTGCTCCATGGATAAAGATTCC ATATCCTCTACAATGGGGTGCACCAACATTCGATGCTGGTCACTGTTTCGGGATGATGGCTGCTGTTATCGTCTCACTCATTGAGTCAACCGGAGGATAC AAAGCTGCAGCAAGACTAGCAAGCGCCACTCCTCCACCAGCTCATATTCTTAGCCGAGGGATAGGCTGGCAAGGCATTGGCATACTGCTGAGTGGCATGT TTGGAACTTTGAGTGGCTGCACTGTATCCCCTGAGAATGTGGGGTTGCTTGGGAGCACTCGAGTTGGGAGTCGAAGGGTGATTCAAATCTCGGCTGGTTT CATGATATTCTTCTCGATGTTGGGGAAATTCGGAGCGTTGTTTGCATCGATACCCTTCCCCATATTTGCAGCATTGTACTGTGTCCTGTTTGGCCTTGTT GCTTCTGTGGGGTTGTCATTCCTACAATTCACAAACATGAACTCGATGAGGAACCTCTTCATCGTCGGTGTCGCAATGTTCCTTGGCTTGTCGGTCCCCG AATACTTCCGGGAATACACTTCCAAGGCCTTCCATGGTCCATCTCATACAAAAGCAGGCTGGTTCAATGATTTTCTGAACACGATCTTCTTCTCATCCCC AACTGTCGCGATGATGGTAGCGGTGTTCTTGGACAATACACTTGACTACAAGGACAGTGCCAGAGACAGAGGGATGCCATGGTGGGCCAAGTTCAGATCA TTCCAAGGAGACAGCAGGAATGAAGAATTCTACACTCTCCCTTTCAACCTAAATCGATTCTTTCCTCCTTCATGA
AA sequence Show only first row Show all	>Lus10029238 pacid=23139773 polypeptide=Lus10029238 locus=Lus10029238.g ID=Lus10029238.BGIv1.0 annot-version=v1.0 MADPKPEEMTHPPMDQLQGLEYCIDSNPSWGETIALGFQHYILALGTAVMIPSFLVPLMGGDSGDKIRVVQTLLFIEGINSLIQTLFGTRLPTVIGGSYA FMVPIISIIHDPALTRIEDDHLRFLSTMRAVQGALIVASSIQIILGFSQLWAICSRFFSPLGMVPVISLMGFGLFDRGFPVVGHCVEYGIPMLILFIVFS QYLKSFSFRQLPVLERFALLITVTVIWAYAHLLTVGGAYRHRPDLTQVNCRTDRAYLISSAPWIKIPYPLQWGAPTFDAGHCFGMMAAVIVSLIESTGGY KAAARLASATPPPAHILSRGIGWQGIGILLSGMFGTLSGCTVSPENVGLLGSTRVGSRRVIQISAGFMIFFSMLGKFGALFASIPFPIFAALYCVLFGLV ASVGLSFLQFTNMNSMRNLFIVGVAMFLGLSVPEYFREYTSKAFHGPSHTKAGWFNDFLNTIFFSSPTVAMMVAVFLDNTLDYKDSARDRGMPWWAKFRS FQGDSRNEEFYTLPFNLNRFFPPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34190			Xanthine/uracil permease famil...		Lus10029238 [exp]	0	1
AT2G34190			Xanthine/uracil permease famil...		Lus10007289 [exp]	4.7	0.8891
AT5G48385			FRIGIDA-like protein (.1)		Lus10027765 [exp]	6.9	0.9049
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10040248 [exp]	7.3	0.9231
AT3G01015			TPX2 (targeting protein for Xk...		Lus10030836 [exp]	11.5	0.9057
AT3G27640			Transducin/WD40 repeat-like su...		Lus10032126 [exp]	17.0	0.8991
AT3G54710		ATCDT1B, CDT1B,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Lus10011306 [exp]	19.8	0.8997
AT1G72250			Di-glucose binding protein wit...		Lus10013714 [exp]	20.9	0.9052
AT2G31320		ATPARP2	poly(ADP-ribose) polymerase 2 ...		Lus10033871 [exp]	22.3	0.9005
AT2G24490		ATRPA32A, RPA2,...	SUPPRESSOR OF ROS1, replicon p...		Lus10020154 [exp]	23.7	0.8980
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10004012 [exp]	24.5	0.8985

Compare expression of checked genes

Lus10029238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.